CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra002559.1-P	Field mustard	plastid	98.83	85.14
CDX80258	Canola	plastid	85.96	82.82
CDY48679	Canola	cytosol, plastid	80.7	82.63
CDX88709	Canola	cytosol, plastid	79.82	69.29
CDX99105	Canola	cytosol, plastid	64.62	68.21
CDY53450	Canola	cytosol	63.16	67.08
CDY61251	Canola	cytosol	63.45	60.11
AT5G59550.2	Thale cress	nucleus, plastid	81.58	54.49
Os03t0271600-01	Rice	plastid	37.13	45.52
EER95109	Sorghum	plastid	35.96	44.73
KRH10229	Soybean	nucleus	40.94	44.59
GSMUA_Achr7P15040_001	Banana	mitochondrion	40.94	44.3
KRH23103	Soybean	nucleus	40.64	44.27
Zm00001d028590_P001	Maize	plastid	35.96	44.24
Zm00001d047824_P001	Maize	plastid	35.96	44.24
TraesCS4A01G095800.1	Wheat	cytosol	35.96	43.93
TraesCS4B01G209100.1	Wheat	plastid	35.96	43.93
TraesCS4D01G209500.1	Wheat	plastid	35.96	43.93
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	44.15	43.02
GSMUA_Achr6P23590_001	Banana	mitochondrion, nucleus	40.94	40.7
CDX74839	Canola	cytosol, plastid	38.3	40.43
VIT_06s0004g05090.t01	Wine grape	mitochondrion, nucleus	45.32	40.16
KRH24759	Soybean	nucleus	42.11	39.89
KRH29763	Soybean	nucleus	42.11	39.89
CDY20473	Canola	nucleus, plastid	38.6	39.52
GSMUA_Achr10P...	Banana	mitochondrion	38.3	38.87
PGSC0003DMT400005512	Potato	mitochondrion	42.98	38.08
Zm00001d035677_P001	Maize	plastid	38.6	37.93
GSMUA_Achr5P07070_001	Banana	nucleus	35.67	37.08
TraesCS3D01G532300.1	Wheat	cytosol	41.52	36.79
Os05t0110000-01	Rice	mitochondrion	35.67	36.64
CDY07641	Canola	nucleus	40.06	36.63
GSMUA_Achr2P19140_001	Banana	mitochondrion	38.6	36.46
TraesCS1A01G029800.1	Wheat	cytosol	42.4	36.34
CDY24951	Canola	nucleus	39.77	36.27
TraesCS3B01G595200.1	Wheat	cytosol	42.11	36.09
TraesCS1B01G036900.1	Wheat	cytosol	41.81	35.84
TraesCS1D01G030300.1	Wheat	nucleus	42.11	35.82
EES17560	Sorghum	plastid	42.98	35.59
HORVU1Hr1G004330.14	Barley	cytosol	41.52	35.41
GSMUA_Achr10P...	Banana	mitochondrion	41.52	35.32
HORVU4Hr1G060130.1	Barley	cytosol	35.96	34.94
Zm00001d011076_P001	Maize	plastid	38.6	34.11
Os01t0972000-01	Rice	nucleus	33.04	33.83
Solyc06g005650.2.1	Tomato	extracellular	19.59	33.5
GSMUA_Achr10P...	Banana	nucleus	27.49	33.33
HORVU3Hr1G041030.1	Barley	mitochondrion	36.26	32.04
HORVU3Hr1G115000.7	Barley	mitochondrion	35.67	31.12
HORVU7Hr1G055010.1	Barley	cytosol	19.88	30.77
CDY36069	Canola	cytosol	18.42	29.03
CDX82271	Canola	cytosol	17.54	28.17
CDY72364	Canola	cytosol	17.84	27.48
CDX75998	Canola	nucleus	14.91	26.56
CDY68603	Canola	cytosol	18.71	26.45
CDX94665	Canola	nucleus	18.13	26.38
CDY32333	Canola	cytosol	17.54	25.53
CDY24592	Canola	nucleus	22.51	23.99
CDY22483	Canola	mitochondrion	21.05	23.76
CDY01669	Canola	plastid	22.22	23.53
CDY33437	Canola	cytosol	22.22	23.46
CDY25360	Canola	cytosol, nucleus, plastid	21.93	23.22
CDY46577	Canola	nucleus	19.59	23.02
CDY23878	Canola	mitochondrion, nucleus	20.47	22.95
CDX74533	Canola	cytosol	19.3	22.6
CDY35437	Canola	mitochondrion, nucleus	20.76	22.4
CDY10554	Canola	cytosol	19.88	22.3
CDY26096	Canola	nucleus	19.01	22.11
CDY56022	Canola	nucleus	20.18	22.04
CDX79968	Canola	mitochondrion, nucleus	19.01	21.89
CDY27204	Canola	mitochondrion, nucleus	19.88	21.79
CDX72127	Canola	mitochondrion	19.88	21.52
CDY22790	Canola	nucleus	16.67	21.11
CDX92768	Canola	nucleus	18.71	20.71
CDX81263	Canola	cytosol, peroxisome, plastid	17.54	20.69
CDY50031	Canola	cytosol	17.54	20.69
CDY18690	Canola	cytosol, peroxisome, plastid	17.54	20.07
CDY42740	Canola	nucleus	18.71	19.88
CDX92770	Canola	nucleus	18.71	19.75
CDY43991	Canola	nucleus	17.84	19.74
CDY56081	Canola	nucleus	13.74	19.67
CDX94901	Canola	cytosol	17.84	19.43
CDY32791	Canola	nucleus	19.88	19.32
CDY01221	Canola	cytosol	12.28	19.27
CDY08249	Canola	cytosol	18.71	19.1
CDY56080	Canola	cytosol	15.79	19.01
CDY42507	Canola	cytosol	18.13	18.29
CDX89343	Canola	cytosol, mitochondrion	18.42	17.9
CDX94342	Canola	mitochondrion, nucleus	19.01	16.8
CDY28208	Canola	cytosol	11.11	16.38
CDY02194	Canola	peroxisome	16.96	14.57
CDY51628	Canola	peroxisome	17.25	14.53
CDY58938	Canola	nucleus	18.71	14.51
CDY03622	Canola	nucleus	18.71	14.35
CDX90972	Canola	cytosol	13.45	13.73
CDY69134	Canola	cytosol	11.4	13.4
CDY34722	Canola	cytosol	15.2	13.33
CDX78323	Canola	cytosol	11.11	13.19
CDX85531	Canola	cytosol	13.16	13.12
CDY34721	Canola	cytosol	14.91	13.08
CDY26465	Canola	cytosol	12.87	12.98
CDX69496	Canola	cytosol	10.82	12.85
CDY21513	Canola	cytosol	12.87	12.36
CDX69973	Canola	cytosol	12.57	11.94
CDY11934	Canola	nucleus	21.05	11.04
CDY23599	Canola	golgi, mitochondrion	17.84	10.02

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	GO:A0A078H5C2	UniProt:A0A078H5C2	EnsemblPlants:CDY33046	ProteinID:CDY33046
ProteinID:CDY33046.1	InterPro:DUF1117	EnsemblPlantsGene:GSBRNA2T00053283001	InterPro:IPR001841	InterPro:IPR013083	PFAM:PF06547
PFAM:PF13639	PFAM:PF14369	PFscan:PS50089	PANTHER:PTHR44274	PANTHER:PTHR44274:SF3	SMART:SM00184
SUPFAM:SSF57850	UniParc:UPI0004EDFB2F	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

BnaA10g12520DBnaA10g12520D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H5C2]

Coordinates

chrLK032304:-:424332..425680

Molecular Weight (calculated)

36733.6 Da

IEP (calculated)

5.493

GRAVY (calculated)

-0.512

Length

342 amino acids

Sequence
(BLAST)

001: MPSSSPSTTI TTPSATASYW CYSCTRFVSV WSESEQGSVA CPHCDGGFIE EVTDSSSAAV ELATPPPTEV RSIDSTRDRR AFEFYYDDGS GSGLRPLPDS
101: IEASGAGIGR SGNPPASKSA IESLPRVEIS DCHISSEANC AVCTEVFEAE TEAREMPCKH IFHDDCITPW LSIRNSCPVC RFELPSEPNR RGSSNNEEGD
201: NAVGMTIWRL PGGGFAVGRF NAAMGEGERV LPVVLTEMDG GGIGSGNSEG PRRISWVRAQ GTVESDSSNG GGSGSGGRLR RMVRGMVSLM RRVRPNRGSN
301: SSSSNRVDLD IGVEPRGLER SSSVMRRYFG RNRSNRDSSV LH

Best Arabidopsis Sequence Match ( AT5G59550.2 )
(BLAST)

001: MDPTNSRHGA SFEFSTRRFT LSTFGQNAPS LYVTTVYNSA IIYPVKHSPR VYLPSNPTPL IPLLRIALKT TFSFSHLQTS LSLLWSAILL SSSSQILSPS
101: KKILKMPSTP TTPTTTTPIT ASYWCYSCTR FVSVWADQGT TTVGSVACPH CDGGFIEQIN DSSSAATELT IPASTEVRSI NNNRRSVIRR RRSGRRPSFN
201: PVIVLQGGAG EREEGEEGDA ARDRRAFEFY YDDGSGSGLR PLPDSVSEIL MGSGFERLLE QLSQIEASAT GIGRSGNPPA SKSAIESLPR VEISDCHIGS
301: EANCAVCTEI FETETEAREM PCKHLFHDDC IVPWLSIRNS CPVCRFELPS EPNRRSNNNE EDNAVGMTIW RLPGGGFAVG RFNAAMRDGE RVLPVVLTEM
401: DGGGIGNSQD GPRRISWVRS HGTLESDSNG TGSGSGSGGR LRRMVRGMVS LMRRVRPNRS SSSSSAAIST SSDNLDLNIE VESRVLDRSN SVMRRYFRRN
501: RSNRDSSSSV LH

Arabidopsis Description

zinc finger (C3HC4-type RING finger) family protein [Source:TAIR;Acc:AT5G59550]
SUBAcon: [nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.