Subcellular Localization
min:
: max
Winner_takes_all: golgi, mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 3
- golgi 3
- extracellular 1
- plasma membrane 2
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY43991 | Canola | nucleus | 48.6 | 95.79 |
| AT3G13430.2 | Thale cress | nucleus | 37.11 | 71.75 |
| CDY46577 | Canola | nucleus | 23.32 | 48.8 |
| CDY10554 | Canola | cytosol | 23.65 | 47.21 |
| CDY08249 | Canola | cytosol | 25.62 | 46.57 |
| CDY26096 | Canola | nucleus | 22.33 | 46.26 |
| CDY56022 | Canola | nucleus | 23.48 | 45.69 |
| CDY32791 | Canola | nucleus | 24.47 | 42.33 |
| CDY56080 | Canola | cytosol | 19.7 | 42.25 |
| CDY50031 | Canola | cytosol | 20.03 | 42.07 |
| GSMUA_Achr11P... | Banana | nucleus | 18.55 | 41.85 |
| CDX92768 | Canola | nucleus | 21.02 | 41.42 |
| CDX89343 | Canola | cytosol, mitochondrion | 23.48 | 40.62 |
| CDX92770 | Canola | nucleus | 21.18 | 39.81 |
| CDY42740 | Canola | nucleus | 20.53 | 38.82 |
| CDY28208 | Canola | cytosol | 14.61 | 38.36 |
| CDX94342 | Canola | mitochondrion, nucleus | 23.97 | 37.73 |
| Zm00001d010635_P001 | Maize | nucleus | 19.21 | 37.5 |
| CDY56081 | Canola | nucleus | 14.45 | 36.82 |
| Os05t0488800-01 | Rice | nucleus | 19.21 | 36.22 |
| Os03t0812200-01 | Rice | nucleus | 21.84 | 36.04 |
| TraesCS1D01G305300.1 | Wheat | nucleus | 19.05 | 34.94 |
| TraesCS1B01G316300.1 | Wheat | nucleus | 18.88 | 34.64 |
| Zm00001d038528_P001 | Maize | cytosol | 18.88 | 34.53 |
| CDX82271 | Canola | cytosol | 11.82 | 33.8 |
| KXG22238 | Sorghum | plastid | 21.35 | 33.42 |
| CDY36069 | Canola | cytosol | 11.82 | 33.18 |
| Zm00001d013005_P002 | Maize | nucleus | 20.2 | 33.15 |
| HORVU5Hr1G111530.1 | Barley | nucleus | 21.35 | 32.66 |
| KXG37275 | Sorghum | nucleus | 20.53 | 32.64 |
| TraesCS5B01G480100.1 | Wheat | nucleus | 21.51 | 32.59 |
| CDY11934 | Canola | nucleus | 34.81 | 32.52 |
| TraesCS5D01G480800.1 | Wheat | nucleus | 21.51 | 32.43 |
| TraesCS5A01G467700.1 | Wheat | nucleus | 21.35 | 32.18 |
| HORVU1Hr1G068950.2 | Barley | golgi | 20.2 | 31.87 |
| CDY72364 | Canola | cytosol | 11.49 | 31.53 |
| CDX94665 | Canola | nucleus | 11.17 | 28.94 |
| CDY68603 | Canola | cytosol | 11.49 | 28.93 |
| CDY32333 | Canola | cytosol | 10.18 | 26.38 |
| CDY24592 | Canola | nucleus | 13.79 | 26.17 |
| CDY25360 | Canola | cytosol, nucleus, plastid | 13.79 | 26.01 |
| CDX81263 | Canola | cytosol, peroxisome, plastid | 12.32 | 25.86 |
| CDY22790 | Canola | nucleus | 11.33 | 25.56 |
| CDY18690 | Canola | cytosol, peroxisome, plastid | 12.32 | 25.08 |
| CDY33437 | Canola | cytosol | 13.3 | 25.0 |
| CDY23878 | Canola | mitochondrion, nucleus | 11.66 | 23.28 |
| CDY22483 | Canola | mitochondrion | 11.17 | 22.44 |
| CDX75998 | Canola | nucleus | 7.06 | 22.4 |
| CDY53450 | Canola | cytosol | 11.82 | 22.36 |
| CDY27204 | Canola | mitochondrion, nucleus | 11.33 | 22.12 |
| CDY42507 | Canola | cytosol | 12.15 | 21.83 |
| CDX74533 | Canola | cytosol | 10.34 | 21.58 |
| CDX72127 | Canola | mitochondrion | 11.17 | 21.52 |
| CDY35437 | Canola | mitochondrion, nucleus | 11.17 | 21.45 |
| CDX80258 | Canola | plastid | 12.48 | 21.41 |
| CDY61251 | Canola | cytosol | 12.64 | 21.33 |
| CDX79968 | Canola | mitochondrion, nucleus | 10.18 | 20.88 |
| CDY01669 | Canola | plastid | 10.51 | 19.81 |
| CDX88709 | Canola | cytosol, plastid | 12.64 | 19.54 |
| CDX99105 | Canola | cytosol, plastid | 10.02 | 18.83 |
| CDY20473 | Canola | nucleus, plastid | 10.02 | 18.26 |
| CDX74839 | Canola | cytosol, plastid | 9.52 | 17.9 |
| CDY33046 | Canola | plastid | 10.02 | 17.84 |
| CDY07641 | Canola | nucleus | 10.84 | 17.65 |
| CDX94901 | Canola | cytosol | 9.03 | 17.52 |
| CDY48679 | Canola | cytosol, plastid | 9.52 | 17.37 |
| CDY24951 | Canola | nucleus | 10.51 | 17.07 |
| CDX69496 | Canola | cytosol | 7.06 | 14.93 |
| CDY69134 | Canola | cytosol | 6.73 | 14.09 |
| CDX78323 | Canola | cytosol | 6.57 | 13.89 |
| CDY21513 | Canola | cytosol | 7.88 | 13.48 |
| CDX69973 | Canola | cytosol | 7.88 | 13.33 |
| CDY26465 | Canola | cytosol | 7.39 | 13.27 |
| CDX90972 | Canola | cytosol | 7.06 | 12.84 |
| CDY58938 | Canola | nucleus | 9.2 | 12.7 |
| CDY34721 | Canola | cytosol | 8.05 | 12.56 |
| CDY34722 | Canola | cytosol | 8.05 | 12.56 |
| CDY03622 | Canola | nucleus | 9.2 | 12.56 |
| CDY02194 | Canola | peroxisome | 7.88 | 12.06 |
| CDY51628 | Canola | peroxisome | 7.88 | 11.82 |
| CDX85531 | Canola | cytosol | 6.57 | 11.66 |
| CDY01221 | Canola | cytosol | 3.78 | 10.55 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | GO:A0A078GE69 | UniProt:A0A078GE69 | EnsemblPlants:CDY23599 | ProteinID:CDY23599 |
| ProteinID:CDY23599.1 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | EnsemblPlantsGene:GSBRNA2T00023810001 | InterPro:IPR001841 |
| InterPro:IPR013083 | PFAM:PF13639 | PFAM:PF14369 | PFscan:PS50089 | PANTHER:PTHR44576 | PANTHER:PTHR44576:SF1 |
| SMART:SM00184 | SUPFAM:SSF57850 | TMHMM:TMhelix | UniParc:UPI0004EEB628 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD |
| SEG:seg | : | : | : | : | : |
Description
BnaC05g39950DBnaC05g39950D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GE69]
Coordinates
chrLK032145:+:317412..322238
Molecular Weight (calculated)
67690.0 Da
IEP (calculated)
4.360
GRAVY (calculated)
-0.345
Length
609 amino acids
Sequence
(BLAST)
(BLAST)
001: MLCGSLRNRV RNWLRDYVRL QSVVVILIYA QIGCAMVGSL GALYNGVLLI NLAIALFALV AIESNSQSLG RTYAVLLFCA ILLDISWLIL FSSEIWNISS
101: EMYKALYIFS VKLTMAMEIA GFVVRLSSSL LWFQIYRLGA SIVDTSLPRR SDSDSQNSFV DPPCLGSQRS RDPDLRTSLL EPSTTAEHRS RSDDFLEDSI
201: NGPRSHEILE DSIDGPAYQF PPFDGGQNNL SSPKATHVMK HHSAENIFGG SQLSAAEASR HKSPLSKSLE SLDSSLHRFK RWFSQVSDSR IRNQGLAMED
301: ANAIRYWCHM CSRSVNPVIE GEVINCNFCQ SGFVEEMDET PDQATGDHPH QAVAESLWAP ILLGVMNDHD QNQRASESNV ENEDGNNDDD DDDDGQINDG
401: EFDLERHLEE VMRRRRRHSA AILDLLQGIR AGLSVESENN DDNNQDNELV VLINSFNQRI RIQDSVDASS VPSGSLGDYF IGPGFEMLLQ RLAENDPNNR
501: YGTPPATKEA VESLETVMVE EGLVQCTVCL DDFEIGVEAK EMPCKHKFHS ECLLPWLELH SSCPVCRYLL PTGDDDGETK TDAETSSNVS MENNGTSVDS
601: SSNNPSVND
101: EMYKALYIFS VKLTMAMEIA GFVVRLSSSL LWFQIYRLGA SIVDTSLPRR SDSDSQNSFV DPPCLGSQRS RDPDLRTSLL EPSTTAEHRS RSDDFLEDSI
201: NGPRSHEILE DSIDGPAYQF PPFDGGQNNL SSPKATHVMK HHSAENIFGG SQLSAAEASR HKSPLSKSLE SLDSSLHRFK RWFSQVSDSR IRNQGLAMED
301: ANAIRYWCHM CSRSVNPVIE GEVINCNFCQ SGFVEEMDET PDQATGDHPH QAVAESLWAP ILLGVMNDHD QNQRASESNV ENEDGNNDDD DDDDGQINDG
401: EFDLERHLEE VMRRRRRHSA AILDLLQGIR AGLSVESENN DDNNQDNELV VLINSFNQRI RIQDSVDASS VPSGSLGDYF IGPGFEMLLQ RLAENDPNNR
501: YGTPPATKEA VESLETVMVE EGLVQCTVCL DDFEIGVEAK EMPCKHKFHS ECLLPWLELH SSCPVCRYLL PTGDDDGETK TDAETSSNVS MENNGTSVDS
601: SSNNPSVND
001: MEDASETSYW CHMCSRSVIP LIQDEIIKCN FCQSGFVEEM DNNDDHQAAD SLWTPILMEM MNNNHDQHST NQEDSESILE DEDEDEDDGD DGDQNNDGEI
101: DITHQLEEIR RIRTRHSTAI VNLLQGIRAG LLIESENNED NPDNSELVVL INSFNQRIRV HQDSVDTTSV PSGSLGDYFI GPGFETLLQR LAENDLNNRY
201: GTPPATKEAV EALAMVKIED SLLQCSVCLD DFEIGMEAKE MPCKHKFHSD CLLPWLELHS SCPVCRYLLP TGDDDEPKTD AETSRNDDNN EDISNASMAS
301: NGSSPDSSSN NSSVN
101: DITHQLEEIR RIRTRHSTAI VNLLQGIRAG LLIESENNED NPDNSELVVL INSFNQRIRV HQDSVDTTSV PSGSLGDYFI GPGFETLLQR LAENDLNNRY
201: GTPPATKEAV EALAMVKIED SLLQCSVCLD DFEIGMEAKE MPCKHKFHSD CLLPWLELHS SCPVCRYLLP TGDDDEPKTD AETSRNDDNN EDISNASMAS
301: NGSSPDSSSN NSSVN
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LJE9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.