Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra019109.1-P | Field mustard | nucleus | 99.69 | 99.69 |
| CDX92770 | Canola | nucleus | 95.96 | 95.37 |
| CDX92768 | Canola | nucleus | 91.3 | 95.15 |
| AT4G26400.1 | Thale cress | nucleus | 76.09 | 68.82 |
| CDX89343 | Canola | cytosol, mitochondrion | 65.53 | 59.94 |
| CDY46577 | Canola | nucleus | 51.24 | 56.7 |
| CDX94342 | Canola | mitochondrion, nucleus | 67.7 | 56.33 |
| CDY32791 | Canola | nucleus | 59.63 | 54.55 |
| KRG97316 | Soybean | nucleus | 50.0 | 46.8 |
| GSMUA_Achr11P... | Banana | nucleus | 36.96 | 44.07 |
| VIT_06s0004g00120.t01 | Wine grape | nucleus | 49.69 | 43.48 |
| CDY43991 | Canola | nucleus | 39.13 | 40.78 |
| PGSC0003DMT400046527 | Potato | nucleus | 45.34 | 40.56 |
| CDY26096 | Canola | nucleus | 36.96 | 40.48 |
| CDY08249 | Canola | cytosol | 41.61 | 40.0 |
| CDY10554 | Canola | cytosol | 37.58 | 39.67 |
| CDY56022 | Canola | nucleus | 38.51 | 39.62 |
| CDY56080 | Canola | cytosol | 32.61 | 36.97 |
| CDY50031 | Canola | cytosol | 32.3 | 35.86 |
| Os03t0812200-01 | Rice | nucleus | 39.13 | 34.15 |
| Zm00001d013005_P002 | Maize | nucleus | 38.2 | 33.15 |
| Zm00001d010635_P001 | Maize | nucleus | 31.68 | 32.69 |
| CDX82271 | Canola | cytosol | 21.43 | 32.39 |
| KXG37275 | Sorghum | nucleus | 38.51 | 32.38 |
| CDY11934 | Canola | nucleus | 65.53 | 32.36 |
| Zm00001d038528_P001 | Maize | cytosol | 33.23 | 32.13 |
| Os05t0488800-01 | Rice | nucleus | 31.99 | 31.89 |
| CDY36069 | Canola | cytosol | 21.12 | 31.34 |
| TraesCS1B01G316300.1 | Wheat | nucleus | 32.3 | 31.33 |
| TraesCS1D01G305300.1 | Wheat | nucleus | 32.3 | 31.33 |
| CDY28208 | Canola | cytosol | 22.36 | 31.03 |
| CDY56081 | Canola | nucleus | 22.67 | 30.54 |
| HORVU5Hr1G111530.1 | Barley | nucleus | 37.58 | 30.4 |
| TraesCS5B01G480100.1 | Wheat | nucleus | 37.89 | 30.35 |
| CDX75998 | Canola | nucleus | 18.01 | 30.21 |
| TraesCS5D01G480800.1 | Wheat | nucleus | 37.58 | 29.95 |
| TraesCS5A01G467700.1 | Wheat | nucleus | 37.58 | 29.95 |
| CDY72364 | Canola | cytosol | 20.19 | 29.28 |
| KXG22238 | Sorghum | plastid | 33.54 | 27.76 |
| HORVU1Hr1G068950.2 | Barley | golgi | 32.92 | 27.46 |
| Solyc01g050040.2.1 | Tomato | nucleus | 24.84 | 27.4 |
| CDY25360 | Canola | cytosol, nucleus, plastid | 25.78 | 25.7 |
| CDY23878 | Canola | mitochondrion, nucleus | 24.22 | 25.57 |
| CDY24592 | Canola | nucleus | 25.47 | 25.55 |
| CDY22483 | Canola | mitochondrion | 23.91 | 25.41 |
| CDX79968 | Canola | mitochondrion, nucleus | 23.29 | 25.25 |
| CDY33437 | Canola | cytosol | 24.53 | 24.38 |
| CDY32333 | Canola | cytosol | 17.7 | 24.26 |
| CDY22790 | Canola | nucleus | 20.19 | 24.07 |
| CDY27204 | Canola | mitochondrion, nucleus | 23.29 | 24.04 |
| CDY35437 | Canola | mitochondrion, nucleus | 23.6 | 23.97 |
| CDY68603 | Canola | cytosol | 18.01 | 23.97 |
| CDX72127 | Canola | mitochondrion | 23.29 | 23.73 |
| CDX94665 | Canola | nucleus | 16.46 | 22.55 |
| CDX74533 | Canola | cytosol | 19.88 | 21.92 |
| CDY53450 | Canola | cytosol | 21.12 | 21.12 |
| CDY23599 | Canola | golgi, mitochondrion | 38.82 | 20.53 |
| CDX80258 | Canola | plastid | 22.36 | 20.28 |
| CDX94901 | Canola | cytosol | 19.57 | 20.06 |
| CDX81263 | Canola | cytosol, peroxisome, plastid | 18.01 | 20.0 |
| CDY01669 | Canola | plastid | 19.88 | 19.81 |
| CDY18690 | Canola | cytosol, peroxisome, plastid | 18.01 | 19.4 |
| CDX88709 | Canola | cytosol, plastid | 23.6 | 19.29 |
| CDY42507 | Canola | cytosol | 20.19 | 19.17 |
| CDY20473 | Canola | nucleus, plastid | 19.57 | 18.86 |
| CDY33046 | Canola | plastid | 19.88 | 18.71 |
| CDY61251 | Canola | cytosol | 20.81 | 18.56 |
| CDX74839 | Canola | cytosol, plastid | 18.32 | 18.21 |
| CDY48679 | Canola | cytosol, plastid | 18.63 | 17.96 |
| CDY07641 | Canola | nucleus | 20.81 | 17.91 |
| CDX99105 | Canola | cytosol, plastid | 18.01 | 17.9 |
| CDY24951 | Canola | nucleus | 20.81 | 17.87 |
| CDX78323 | Canola | cytosol | 14.91 | 16.67 |
| CDY69134 | Canola | cytosol | 14.6 | 16.15 |
| CDY21513 | Canola | cytosol | 16.77 | 15.17 |
| CDX69973 | Canola | cytosol | 16.77 | 15.0 |
| CDY03622 | Canola | nucleus | 20.5 | 14.8 |
| CDY58938 | Canola | nucleus | 20.19 | 14.74 |
| CDY01221 | Canola | cytosol | 9.32 | 13.76 |
| CDX90972 | Canola | cytosol | 13.98 | 13.43 |
| CDX69496 | Canola | cytosol | 11.8 | 13.19 |
| CDY34721 | Canola | cytosol | 15.84 | 13.08 |
| CDY34722 | Canola | cytosol | 15.84 | 13.08 |
| CDY26465 | Canola | cytosol | 13.66 | 12.98 |
| CDX85531 | Canola | cytosol | 13.04 | 12.24 |
| CDY02194 | Canola | peroxisome | 13.98 | 11.31 |
| CDY51628 | Canola | peroxisome | 13.98 | 11.08 |
Protein Annotations
| EnsemblPlants:CDY42740 | EnsemblPlantsGene:GSBRNA2T00075281001 | Gene3D:3.30.40.10 | GO:A0A078HW83 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR44576 | PANTHER:PTHR44576:SF1 | PFAM:PF13639 | PFAM:PF14369 |
| PFscan:PS50089 | ProteinID:CDY42740 | ProteinID:CDY42740.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 |
| UniParc:UPI0004EEA855 | UniProt:A0A078HW83 | MapMan:35.1 | : | : | : |
Description
BnaA03g47990DBnaA03g47990D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HW83]
Coordinates
chrLK032533:+:43010..44503
Molecular Weight (calculated)
36649.0 Da
IEP (calculated)
6.238
GRAVY (calculated)
-0.700
Length
322 amino acids
Sequence
(BLAST)
(BLAST)
001: MAARYWCHMC SQVVDPIIDA EIKCPYCQSG FLEEMSGENN GGSSSSLREV QDQETDFGTD RALTLWGPVL VGMMSNPRRR RRFRRTEFGV DNVEVNVAGD
101: NPHHHHRRHR DREHEGEIDL DREVDSIMRR RRRSSAAILQ LLQGIREGLN SDHESSIEDY LARPELDHLL RSLADNDLIR RQGTLPARKE AVDNLPMVKI
201: CEPLQCSVCL DEFDKGCEAK EMPCKHKFHI RCIVPWLELH SSCPVCRYEL PPDEELKTDL VRPRTRSVGV NLSNENVEEN ARNISGSERR FSLRWPFSGL
301: FSSSSSSSGS TSGSSQLNEN AS
101: NPHHHHRRHR DREHEGEIDL DREVDSIMRR RRRSSAAILQ LLQGIREGLN SDHESSIEDY LARPELDHLL RSLADNDLIR RQGTLPARKE AVDNLPMVKI
201: CEPLQCSVCL DEFDKGCEAK EMPCKHKFHI RCIVPWLELH SSCPVCRYEL PPDEELKTDL VRPRTRSVGV NLSNENVEEN ARNISGSERR FSLRWPFSGL
301: FSSSSSSSGS TSGSSQLNEN AS
001: MSARYWCHMC SQMVNPVIGA EIKCPFCQSG FVEEMSREIN GGSSSSLREV QDPEIDFGTD RALSLWGPIL LGMMSNPRRR RRFRRTEFGV DNDEVNVSDD
101: VDGNDSVDID RHHHRRHRHR QQGREIDLDR EFESILRRRR RSSATILQLL QGIRAGIASE YESSDRDLLN QSAVVQGSTS LNQNRNNTSL SAIGDYFVGS
201: SLDHLLEHLA DNDSIRHGSL PARKEVVDNL PTVKISESLQ CSICLDDFDK GSEAKEMPCK HKFHIRCIVP WLELHSSCPV CRYELPPDDE TKVNPVRPRT
301: RTLEINVSNE NVEDDARNSN VSERRFSFPW PFSGLFSSSS SSSASASGSS HLGENS
101: VDGNDSVDID RHHHRRHRHR QQGREIDLDR EFESILRRRR RSSATILQLL QGIRAGIASE YESSDRDLLN QSAVVQGSTS LNQNRNNTSL SAIGDYFVGS
201: SLDHLLEHLA DNDSIRHGSL PARKEVVDNL PTVKISESLQ CSICLDDFDK GSEAKEMPCK HKFHIRCIVP WLELHSSCPV CRYELPPDDE TKVNPVRPRT
301: RTLEINVSNE NVEDDARNSN VSERRFSFPW PFSGLFSSSS SSSASASGSS HLGENS
Arabidopsis Description
AT4G26400 protein [Source:UniProtKB/TrEMBL;Acc:Q8L5Z3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.