Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY42740 | Canola | nucleus | 68.82 | 76.09 |
| CDX92770 | Canola | nucleus | 69.1 | 75.93 |
| Bra019109.1-P | Field mustard | nucleus | 68.54 | 75.78 |
| CDX92768 | Canola | nucleus | 65.45 | 75.4 |
| Bra026444.1-P | Field mustard | nucleus | 74.44 | 71.43 |
| CDX89343 | Canola | cytosol, mitochondrion | 64.89 | 65.62 |
| CDX94342 | Canola | mitochondrion, nucleus | 67.42 | 62.02 |
| AT5G56340.1 | Thale cress | nucleus | 67.13 | 60.35 |
| KRG97316 | Soybean | nucleus | 52.53 | 54.36 |
| GSMUA_Achr11P... | Banana | nucleus | 36.52 | 48.15 |
| VIT_06s0004g00120.t01 | Wine grape | nucleus | 48.88 | 47.28 |
| PGSC0003DMT400046527 | Potato | nucleus | 46.63 | 46.11 |
| AT1G55530.2 | Thale cress | nucleus | 43.54 | 44.16 |
| AT3G13430.2 | Thale cress | nucleus | 37.08 | 41.9 |
| Os03t0812200-01 | Rice | nucleus | 38.48 | 37.13 |
| Zm00001d013005_P002 | Maize | nucleus | 37.36 | 35.85 |
| Os05t0488800-01 | Rice | nucleus | 32.3 | 35.6 |
| TraesCS1B01G316300.1 | Wheat | nucleus | 32.58 | 34.94 |
| TraesCS1D01G305300.1 | Wheat | nucleus | 32.58 | 34.94 |
| Zm00001d010635_P001 | Maize | nucleus | 30.34 | 34.62 |
| KXG37275 | Sorghum | nucleus | 37.08 | 34.46 |
| Zm00001d038528_P001 | Maize | cytosol | 32.02 | 34.23 |
| TraesCS5B01G480100.1 | Wheat | nucleus | 37.36 | 33.08 |
| HORVU5Hr1G111530.1 | Barley | nucleus | 36.8 | 32.91 |
| TraesCS5D01G480800.1 | Wheat | nucleus | 37.08 | 32.67 |
| TraesCS5A01G467700.1 | Wheat | nucleus | 36.8 | 32.43 |
| Solyc01g050040.2.1 | Tomato | nucleus | 26.4 | 32.19 |
| KXG22238 | Sorghum | plastid | 33.15 | 30.33 |
| HORVU1Hr1G068950.2 | Barley | golgi | 32.87 | 30.31 |
| AT3G56580.1 | Thale cress | mitochondrion | 24.44 | 27.19 |
| AT2G40830.4 | Thale cress | mitochondrion | 24.72 | 26.83 |
| AT1G60360.1 | Thale cress | nucleus | 20.51 | 22.32 |
| AT3G19950.2 | Thale cress | cytosol | 22.75 | 20.98 |
| AT5G64920.1 | Thale cress | cytosol | 18.82 | 20.06 |
| AT3G46620.1 | Thale cress | cytosol, plastid | 21.35 | 19.24 |
| AT2G39720.2 | Thale cress | nucleus | 19.1 | 16.96 |
| AT5G08139.1 | Thale cress | cytosol | 16.29 | 15.43 |
| AT5G59550.2 | Thale cress | nucleus, plastid | 21.63 | 15.04 |
| AT5G01980.1 | Thale cress | nucleus | 20.51 | 14.81 |
| AT5G15820.1 | Thale cress | cytosol | 13.2 | 13.51 |
| AT5G60820.1 | Thale cress | cytosol | 15.45 | 13.13 |
| AT3G02340.2 | Thale cress | cytosol | 13.48 | 11.74 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | EntrezGene:828746 | UniProt:A0A178UZG1 | ProteinID:AEE85193.1 | ProteinID:AEE85194.1 |
| EMBL:AK317517 | ArrayExpress:AT4G26400 | EnsemblPlantsGene:AT4G26400 | RefSeq:AT4G26400 | TAIR:AT4G26400 | RefSeq:AT4G26400-TAIR-G |
| EnsemblPlants:AT4G26400.1 | TAIR:AT4G26400.1 | EMBL:AY099807 | EMBL:BT000305 | GO:GO:0000209 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009719 |
| GO:GO:0009987 | GO:GO:0010200 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0042787 | GO:GO:0043161 |
| GO:GO:0061630 | InterPro:IPR001841 | InterPro:IPR013083 | RefSeq:NP_194370.2 | RefSeq:NP_849554.1 | ProteinID:OAO98071.1 |
| PFAM:PF13639 | PFAM:PF14369 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 |
| PFscan:PS50089 | PANTHER:PTHR44576 | PANTHER:PTHR44576:SF1 | UniProt:Q8L5Z3 | SMART:SM00184 | SUPFAM:SSF57850 |
| UniParc:UPI00000AC69E | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : |
Description
AT4G26400 protein [Source:UniProtKB/TrEMBL;Acc:Q8L5Z3]
Coordinates
chr4:-:13344595..13346597
Molecular Weight (calculated)
40207.8 Da
IEP (calculated)
6.193
GRAVY (calculated)
-0.668
Length
356 amino acids
Sequence
(BLAST)
(BLAST)
001: MSARYWCHMC SQMVNPVIGA EIKCPFCQSG FVEEMSREIN GGSSSSLREV QDPEIDFGTD RALSLWGPIL LGMMSNPRRR RRFRRTEFGV DNDEVNVSDD
101: VDGNDSVDID RHHHRRHRHR QQGREIDLDR EFESILRRRR RSSATILQLL QGIRAGIASE YESSDRDLLN QSAVVQGSTS LNQNRNNTSL SAIGDYFVGS
201: SLDHLLEHLA DNDSIRHGSL PARKEVVDNL PTVKISESLQ CSICLDDFDK GSEAKEMPCK HKFHIRCIVP WLELHSSCPV CRYELPPDDE TKVNPVRPRT
301: RTLEINVSNE NVEDDARNSN VSERRFSFPW PFSGLFSSSS SSSASASGSS HLGENS
101: VDGNDSVDID RHHHRRHRHR QQGREIDLDR EFESILRRRR RSSATILQLL QGIRAGIASE YESSDRDLLN QSAVVQGSTS LNQNRNNTSL SAIGDYFVGS
201: SLDHLLEHLA DNDSIRHGSL PARKEVVDNL PTVKISESLQ CSICLDDFDK GSEAKEMPCK HKFHIRCIVP WLELHSSCPV CRYELPPDDE TKVNPVRPRT
301: RTLEINVSNE NVEDDARNSN VSERRFSFPW PFSGLFSSSS SSSASASGSS HLGENS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.