Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY46577 | Canola | nucleus | 50.29 | 59.45 |
| VIT_06s0004g00120.t01 | Wine grape | nucleus | 62.79 | 58.7 |
| PGSC0003DMT400046527 | Potato | nucleus | 56.69 | 54.17 |
| CDX92768 | Canola | nucleus | 47.67 | 53.07 |
| AT5G56340.1 | Thale cress | nucleus | 60.76 | 52.78 |
| AT4G26400.1 | Thale cress | nucleus | 54.36 | 52.53 |
| Bra002823.1-P | Field mustard | nucleus | 53.49 | 52.27 |
| CDY32791 | Canola | nucleus | 53.49 | 52.27 |
| CDX92770 | Canola | nucleus | 47.67 | 50.62 |
| CDY42740 | Canola | nucleus | 46.8 | 50.0 |
| GSMUA_Achr11P... | Banana | nucleus | 39.24 | 50.0 |
| Bra019109.1-P | Field mustard | nucleus | 46.51 | 49.69 |
| Bra026444.1-P | Field mustard | nucleus | 52.03 | 48.25 |
| CDX89343 | Canola | cytosol, mitochondrion | 48.26 | 47.16 |
| CDX94342 | Canola | mitochondrion, nucleus | 50.0 | 44.44 |
| Os03t0812200-01 | Rice | nucleus | 45.64 | 42.55 |
| Zm00001d010635_P001 | Maize | nucleus | 37.79 | 41.67 |
| Solyc01g050040.2.1 | Tomato | nucleus | 35.17 | 41.44 |
| Os05t0488800-01 | Rice | nucleus | 37.21 | 39.63 |
| TraesCS1D01G305300.1 | Wheat | nucleus | 37.79 | 39.16 |
| TraesCS1B01G316300.1 | Wheat | nucleus | 37.79 | 39.16 |
| Zm00001d013005_P002 | Maize | nucleus | 41.57 | 38.54 |
| KXG37275 | Sorghum | nucleus | 42.44 | 38.12 |
| TraesCS5B01G480100.1 | Wheat | nucleus | 43.9 | 37.56 |
| Zm00001d038528_P001 | Maize | cytosol | 36.05 | 37.24 |
| HORVU5Hr1G111530.1 | Barley | nucleus | 43.02 | 37.19 |
| TraesCS5A01G467700.1 | Wheat | nucleus | 43.6 | 37.13 |
| TraesCS5D01G480800.1 | Wheat | nucleus | 43.6 | 37.13 |
| KRH70139 | Soybean | nucleus | 32.85 | 35.42 |
| KRH08483 | Soybean | cytosol, nucleus, plastid | 33.14 | 35.4 |
| HORVU1Hr1G068950.2 | Barley | golgi | 38.95 | 34.72 |
| Bra028935.1-P | Field mustard | nucleus | 56.69 | 34.33 |
| KXG22238 | Sorghum | plastid | 38.66 | 34.19 |
| KRH36132 | Soybean | nucleus | 25.29 | 30.42 |
| CDY11934 | Canola | nucleus | 56.69 | 29.91 |
| KRG90622 | Soybean | nucleus | 24.71 | 28.52 |
| KRH71659 | Soybean | nucleus | 25.29 | 28.16 |
| KRH33121 | Soybean | nucleus | 25.0 | 27.83 |
| KRG90607 | Soybean | nucleus | 27.03 | 27.6 |
| KRH18631 | Soybean | nucleus | 24.13 | 27.12 |
| KRH36150 | Soybean | nucleus | 26.16 | 27.03 |
| KRH38895 | Soybean | nucleus | 27.91 | 25.53 |
| KRH09399 | Soybean | nucleus | 27.33 | 25.47 |
| KRH10229 | Soybean | nucleus | 22.09 | 24.2 |
| KRH23103 | Soybean | nucleus | 22.09 | 24.2 |
| KRH18634 | Soybean | nucleus | 16.57 | 24.15 |
| KRH29763 | Soybean | nucleus | 25.0 | 23.82 |
| KRH14643 | Soybean | nucleus | 22.97 | 23.51 |
| KRG99997 | Soybean | plastid | 21.22 | 23.4 |
| KRH49133 | Soybean | plastid | 20.64 | 23.13 |
| KRH24759 | Soybean | nucleus | 24.13 | 22.99 |
| KRH73496 | Soybean | mitochondrion | 24.42 | 22.64 |
| KRG97885 | Soybean | mitochondrion | 22.38 | 21.57 |
| KRH30994 | Soybean | nucleus | 24.42 | 21.37 |
| KRH10441 | Soybean | mitochondrion | 19.77 | 21.18 |
| KRH64713 | Soybean | nucleus | 21.51 | 21.02 |
| KRH73053 | Soybean | nucleus | 23.55 | 20.72 |
| KRH44018 | Soybean | mitochondrion | 18.9 | 20.5 |
| KRH15082 | Soybean | nucleus | 22.67 | 20.42 |
| KRH56750 | Soybean | cytosol | 15.7 | 15.79 |
| KRH18313 | Soybean | nucleus | 16.28 | 14.97 |
| KRH03189 | Soybean | nucleus | 15.12 | 14.65 |
| KRG93748 | Soybean | nucleus, plastid | 15.99 | 14.47 |
| KRH00522 | Soybean | plastid | 20.64 | 12.7 |
| KRH40635 | Soybean | nucleus, plastid | 20.06 | 12.52 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | EMBL:ACUP02010793 | EnsemblPlantsGene:GLYMA_18G000200 | GO:GO:0000209 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 |
| GO:GO:0016740 | GO:GO:0019538 | GO:GO:0042787 | GO:GO:0043161 | GO:GO:0061630 | UniProt:I1MY79 |
| InterPro:IPR001841 | InterPro:IPR013083 | EnsemblPlants:KRG97316 | ProteinID:KRG97316 | ProteinID:KRG97316.1 | ProteinID:KRG97317.1 |
| ProteinID:KRG97318.1 | ProteinID:KRG97319.1 | PFAM:PF13639 | PFAM:PF14369 | PFscan:PS50089 | PANTHER:PTHR44576 |
| PANTHER:PTHR44576:SF4 | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI000233F10B | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr18:-:47154..49570
Molecular Weight (calculated)
39006.9 Da
IEP (calculated)
4.598
GRAVY (calculated)
-0.830
Length
344 amino acids
Sequence
(BLAST)
(BLAST)
001: MAARYWCHMC SQMVNPIMDM EIRCPFCQSG FVEEMGNTPS SSSIPNTSES DFESDRALSL WAPILLGMMG NPRHPRRLRQ IANDNGNRDY VDGVADHGRE
101: TEYDQEFESI LRRRRNSATI LQLLQGIRTG LASESYENTD GHDHDRERER EREREHMILI NPLNQTIIVQ GSYESNRDQS DNHSSVGSLG DYFTGPGFDI
201: LLQHLAENDP NRYGTPPAQK EAIEALPTVI INENSQCSVC LDDFEVGSEA KEMPCKHRFH SGCILPWLEL HSSCPVCRLQ LPLDESKQDS DLSRDSRSQR
301: EDESIEHDND EERDGEGRNA SGGRRFSFPW PFNGLFSSSN SSSS
101: TEYDQEFESI LRRRRNSATI LQLLQGIRTG LASESYENTD GHDHDRERER EREREHMILI NPLNQTIIVQ GSYESNRDQS DNHSSVGSLG DYFTGPGFDI
201: LLQHLAENDP NRYGTPPAQK EAIEALPTVI INENSQCSVC LDDFEVGSEA KEMPCKHRFH SGCILPWLEL HSSCPVCRLQ LPLDESKQDS DLSRDSRSQR
301: EDESIEHDND EERDGEGRNA SGGRRFSFPW PFNGLFSSSN SSSS
001: MEETMAARYW CHMCSQMVNP VMESEIKCPF CQSGFIEEMS GNGGGGGGRG IRDVQDSETD FGTDRALSLW APILLGMMSS PRRRRRFRRS EFGEENDDNG
101: DDLTTNADGN GNDSNNSNNN VYRHHRARRH GGEIDLDREF ESILRRRRRS SGNILQLLQG IRAGIASEYE SSDNNWDNSR ERDRVIMINP YNQSLVVPSD
201: QNQNHPSLTS LGDYFIGPGL DLLLQHLAEN DPNRQGTPPA RKEAVEALPT VKIMEPLQCS VCLDDFEKGT EAKEMPCKHK FHVRCIVPWL ELHSSCPVCR
301: FELPSSADDD DETKTDSERV LRTRNVRETS NGNVVENVGN ADRGREDEVR SGNGRRFSFP WPFSGLFSSS SSSSSSTSGS QSGENNFFSR SSGSSR
101: DDLTTNADGN GNDSNNSNNN VYRHHRARRH GGEIDLDREF ESILRRRRRS SGNILQLLQG IRAGIASEYE SSDNNWDNSR ERDRVIMINP YNQSLVVPSD
201: QNQNHPSLTS LGDYFIGPGL DLLLQHLAEN DPNRQGTPPA RKEAVEALPT VKIMEPLQCS VCLDDFEKGT EAKEMPCKHK FHVRCIVPWL ELHSSCPVCR
301: FELPSSADDD DETKTDSERV LRTRNVRETS NGNVVENVGN ADRGREDEVR SGNGRRFSFP WPFSGLFSSS SSSSSSTSGS QSGENNFFSR SSGSSR
Arabidopsis Description
ATCRT1RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FM98]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.