CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH49133	Soybean	plastid	93.27	94.79
KRH23103	Soybean	nucleus	47.44	47.13
KRH10229	Soybean	nucleus	47.44	47.13
KRH24759	Soybean	nucleus	51.92	44.88
KRH29763	Soybean	nucleus	50.64	43.77
KRG97885	Soybean	mitochondrion	48.4	42.3
KRH30994	Soybean	nucleus	52.24	41.48
KRH15082	Soybean	nucleus	45.51	37.17
KRH73053	Soybean	nucleus	45.83	36.57
VIT_08s0007g00720.t01	Wine grape	plastid	55.77	33.72
KRH18634	Soybean	nucleus	20.19	26.69
KRH33121	Soybean	nucleus	25.64	25.89
KRH71659	Soybean	nucleus	25.32	25.57
KRH18631	Soybean	nucleus	24.36	24.84
KRH36132	Soybean	nucleus	21.47	23.43
KRH14643	Soybean	nucleus	25.0	23.21
KRH38895	Soybean	nucleus	27.24	22.61
KRH70139	Soybean	nucleus	23.08	22.57
KRG90622	Soybean	nucleus	21.47	22.48
KRH09399	Soybean	nucleus	26.28	22.22
KRH64713	Soybean	nucleus	25.0	22.16
KRH08483	Soybean	cytosol, nucleus, plastid	22.76	22.05
KRG97316	Soybean	nucleus	23.4	21.22
KRG90607	Soybean	nucleus	22.44	20.77
KRH10441	Soybean	mitochondrion	21.15	20.56
KRH73496	Soybean	mitochondrion	24.36	20.49
KRH36150	Soybean	nucleus	21.79	20.42
KRH44018	Soybean	mitochondrion	19.55	19.24
KRH56750	Soybean	cytosol	15.06	13.74
KRH03189	Soybean	nucleus	15.06	13.24
KRH18313	Soybean	nucleus	15.38	12.83
KRH40635	Soybean	nucleus, plastid	21.47	12.16
KRH00522	Soybean	plastid	20.83	11.63
KRG93748	Soybean	nucleus, plastid	14.1	11.58

Protein Annotations

EntrezGene:100778994	Gene3D:3.30.40.10	MapMan:35.1	EMBL:ACUP02011361	InterPro:DUF1117	EnsemblPlantsGene:GLYMA_18G184200
GO:GO:0000209	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016740	GO:GO:0019538	GO:GO:0042787	GO:GO:0043161
GO:GO:0061630	UniProt:I1N2J5	InterPro:IPR001841	InterPro:IPR013083	EnsemblPlants:KRG99997	ProteinID:KRG99997
ProteinID:KRG99997.1	PFAM:PF06547	PFAM:PF13639	PFAM:PF14369	PFscan:PS50089	PANTHER:PTHR44274
PANTHER:PTHR44274:SF2	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000233E276	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:-:44364673..44366631

Molecular Weight (calculated)

33712.4 Da

IEP (calculated)

7.862

GRAVY (calculated)

-0.364

Length

312 amino acids

Sequence
(BLAST)

001: MASLGSPSSS FWCYRCNRIV RVPQNDAVLL CPDCNSGFLE ELQTPPHSRR STRGGGGSPF NPVIVLRNAN DVVSPETRNF ELYYNDAVSG SSGPSTLRPL
101: PQGVTEFLLG SGFDNLLDQL DGAAGGSAPP PPAAASKAAI ESMPVVKILA SHTYAESHCA VCMENFEINC DAREMPCGHV YHSECIVPWL SVRNSCPVCR
201: HEVPSDEVEE SNSNSNNNTV GLTIWRLPGG GFAVGRFIGG RELPLVYTEM DGGFNGANGA PRRVAWDSSV GRSRESRGFG SALRNVFSYF GRVRSSFSRR
301: TRNSRANGRS RS

Best Arabidopsis Sequence Match ( AT2G39720.1 )
(BLAST)

001: MASGSYWCYS CSRFVWVSDS ISCPDCDGGF LELIQEPLDF TPSDSFTTTT TTQHRSPTRF PPPSSSSSTP SASMHADNSP TPTIVTRTRS NRSPNPVIVL
101: RGSAAAPSSD VVSEGLDRSA FQMYYDDGTD SGLRPLPPSM TEFLLGSGFD RLLDQISQIE LNTNRNLRSC EHPPASKSAI EALPLIEIDP THLLSDSQSH
201: CAVCKENFVL KSSAREMPCN HIYHPDCILP WLAIRNSCPV CRHELPAEDL TDGTGAALTA VTATAEEEED SAAGLTIWRL PGGGFAVGRI PGGWRGGDRM
301: MPVVYTEVDG GRLGDERLPR RVAWGSRRGG RDGGGSRERG GGFAGRIMRL FGCFSGSSGS IAAAAAASSG SGSRIRVTRR TRSFSMFSTA SSSSRRRNWL
401: A

Arabidopsis Description

RHC2AProbable E3 ubiquitin-protein ligase RHC2A [Source:UniProtKB/Swiss-Prot;Acc:O22283]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.