CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 3
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG97885	Soybean	mitochondrion	85.75	94.4
GSMUA_Achr7P15040_001	Banana	mitochondrion	49.87	62.03
GSMUA_Achr10P...	Banana	mitochondrion	50.89	59.35
TraesCS4A01G095800.1	Wheat	cytosol	41.98	58.93
Os03t0271600-01	Rice	plastid	41.73	58.78
Zm00001d047824_P001	Maize	plastid	41.48	58.63
Zm00001d028590_P001	Maize	plastid	41.48	58.63
TraesCS4D01G209500.1	Wheat	plastid	41.73	58.57
TraesCS4B01G209100.1	Wheat	plastid	41.73	58.57
EER95109	Sorghum	plastid	40.97	58.55
Solyc04g011610.1.1	Tomato	nucleus	58.52	58.23
PGSC0003DMT400016233	Potato	nucleus	58.27	58.12
KRH10229	Soybean	nucleus	45.8	57.32
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	50.38	56.41
KRH23103	Soybean	nucleus	45.04	56.37
KRH24759	Soybean	nucleus	50.64	55.12
GSMUA_Achr6P23590_001	Banana	mitochondrion, nucleus	48.09	54.94
GSMUA_Achr5P07070_001	Banana	nucleus	45.8	54.71
KRH29763	Soybean	nucleus	50.13	54.57
KRH15082	Soybean	nucleus	52.16	53.66
Os05t0110000-01	Rice	mitochondrion	45.29	53.45
KRH49133	Soybean	plastid	41.48	53.09
GSMUA_Achr2P19140_001	Banana	mitochondrion	48.6	52.76
KRH73053	Soybean	nucleus	52.42	52.69
KRG99997	Soybean	plastid	41.48	52.24
TraesCS3D01G532300.1	Wheat	cytosol	50.38	51.3
Zm00001d035677_P001	Maize	plastid	44.78	50.57
TraesCS3B01G595200.1	Wheat	cytosol	50.64	49.87
GSMUA_Achr10P...	Banana	mitochondrion	50.89	49.75
Os01t0972000-01	Rice	nucleus	41.48	48.8
TraesCS1A01G029800.1	Wheat	cytosol	49.36	48.62
TraesCS1B01G036900.1	Wheat	cytosol	49.36	48.62
HORVU1Hr1G004330.14	Barley	cytosol	49.11	48.13
TraesCS1D01G030300.1	Wheat	nucleus	49.11	48.01
Zm00001d011076_P001	Maize	plastid	46.06	46.77
HORVU4Hr1G060130.1	Barley	cytosol	41.73	46.59
EES17560	Sorghum	plastid	48.6	46.25
HORVU3Hr1G041030.1	Barley	mitochondrion	44.53	45.22
HORVU7Hr1G055010.1	Barley	cytosol	25.19	44.8
GSMUA_Achr10P...	Banana	nucleus	31.04	43.26
HORVU3Hr1G115000.7	Barley	mitochondrion	42.75	42.86
KRH71659	Soybean	nucleus	24.17	30.74
KRH33121	Soybean	nucleus	23.92	30.42
KRH14643	Soybean	nucleus	25.95	30.36
KRH18634	Soybean	nucleus	18.07	30.08
KRH18631	Soybean	nucleus	23.41	30.07
KRH36132	Soybean	nucleus	21.12	29.02
KRG90622	Soybean	nucleus	21.63	28.52
KRH38895	Soybean	nucleus	25.45	26.6
KRH09399	Soybean	nucleus	24.68	26.29
KRH73496	Soybean	mitochondrion	24.68	26.15
KRH64713	Soybean	nucleus	22.65	25.28
KRH08483	Soybean	cytosol, nucleus, plastid	20.1	24.53
KRG97316	Soybean	nucleus	21.37	24.42
KRG90607	Soybean	nucleus	20.87	24.33
KRH70139	Soybean	nucleus	19.59	24.14
KRH36150	Soybean	nucleus	20.36	24.02
KRH10441	Soybean	mitochondrion	19.08	23.36
KRH44018	Soybean	mitochondrion	17.56	21.77
KRH18313	Soybean	nucleus	15.52	16.31
KRG93748	Soybean	nucleus, plastid	15.27	15.79
KRH40635	Soybean	nucleus, plastid	21.37	15.24
KRH56750	Soybean	cytosol	12.98	14.91
KRH00522	Soybean	plastid	21.12	14.85
KRH03189	Soybean	nucleus	12.98	14.37

Protein Annotations

EntrezGene:100784364	Gene3D:3.30.40.10	MapMan:35.1	EMBL:ACUP02007116	InterPro:DUF1117	EnsemblPlantsGene:GLYMA_11G220400
GO:GO:0000209	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016740	GO:GO:0019538	GO:GO:0042787	GO:GO:0043161
GO:GO:0061630	UniProt:I1LMG7	InterPro:IPR001841	InterPro:IPR013083	EnsemblPlants:KRH30994	ProteinID:KRH30994
ProteinID:KRH30994.1	PFAM:PF06547	PFAM:PF13639	PFAM:PF14369	PFscan:PS50089	PANTHER:PTHR44274
PANTHER:PTHR44274:SF3	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000233CE12	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr11:-:31570852..31573083

Molecular Weight (calculated)

43462.8 Da

IEP (calculated)

8.229

GRAVY (calculated)

-0.678

Length

393 amino acids

Sequence
(BLAST)

001: MMMSSGTSSY WCYRCSRFVR VWPHHTVVCP DCDGGFIEEI EHPPRSVHLD PRRHRHRFPA AAMYMIGQRP SSDPRPASSL RRTRRNGGDR SPFNPVIVLR
101: GGAEDESRGF ELFYDDGTGS GLRPLPPSMS EFLLGSGFDR LLEQLSQIEI NGIGRYEHPP ASKAAIDSLP TIEIDDTHLA MESHCAVCKE AFETSTAVRE
201: MPCKHIYHPE CILPWLALHN SCPVCRHELP ADTPNPNPNP NSNSNSNQNP SQNVGLNEEE NVGLTIWRLP GGGFAVGRFS GGRRGADREL PVVYTEMDGG
301: FNNGGGEPRR ISWSRGNRGR ESGGLNRFFR NLFGCFRGGS SNTSSSGGAS ATQRSASSRE SMRASSSRSS TMDLSPRSRR TWSMDVNSGM RAW

Best Arabidopsis Sequence Match ( AT2G39720.2 )
(BLAST)

001: MASGSYWCYS CSRFVWVSDS ISCPDCDGGF LELIQEPLDF TPSDSFTTTT TTQHRSPTRF PPPSSSSSTP SASMHADNSP TPTIVTRTRS NRSPNPVIVL
101: RGSAAAPSSD VVSEGLDRSA FQMYYDDGTD SGLRPLPPSM TEFLLGSGFD RLLDQISQIE LNTNRNLRSC EHPPASKSAI EALPLIEIDP THLLSDSQSH
201: CAVCKENFVL KSSAREMPCN HIYHPDCILP WLAIRNSCPV CRHELPAEDL TDGTGAALTA VTATAEEEED SAAGLTIWRL PGGGFAVGRI PGGWRGGDRM
301: MPVVYTEVDG GRLGDERLPR RVAWGSRRGG RDGGGSRERG GGFAGRIMRL FGCFSGSSGS IAAAAAASSG SGSRIRVTRR TRSFSMFSTA SSSSRRRNWL
401: A

Arabidopsis Description

RHC2AProbable E3 ubiquitin-protein ligase RHC2A [Source:UniProtKB/Swiss-Prot;Acc:O22283]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.