Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G030300.1 | Wheat | nucleus | 98.5 | 97.76 |
| TraesCS1A01G029800.1 | Wheat | cytosol | 96.99 | 96.99 |
| HORVU1Hr1G004330.14 | Barley | cytosol | 92.98 | 92.52 |
| Os05t0110000-01 | Rice | mitochondrion | 70.93 | 84.98 |
| Zm00001d035677_P001 | Maize | plastid | 63.66 | 72.99 |
| EES17560 | Sorghum | plastid | 70.68 | 68.28 |
| Zm00001d011076_P001 | Maize | plastid | 64.91 | 66.93 |
| TraesCS3B01G595200.1 | Wheat | cytosol | 63.91 | 63.91 |
| GSMUA_AchrUn_... | Banana | mitochondrion, plastid | 52.63 | 59.83 |
| TraesCS4B01G209100.1 | Wheat | plastid | 41.1 | 58.57 |
| GSMUA_Achr6P23590_001 | Banana | mitochondrion, nucleus | 48.12 | 55.81 |
| VIT_06s0004g05090.t01 | Wine grape | mitochondrion, nucleus | 53.63 | 55.44 |
| KRH23103 | Soybean | nucleus | 43.36 | 55.1 |
| Os01t0972000-01 | Rice | nucleus | 46.12 | 55.09 |
| KRH10229 | Soybean | nucleus | 43.11 | 54.78 |
| KRH24759 | Soybean | nucleus | 47.62 | 52.63 |
| KRG97885 | Soybean | mitochondrion | 46.87 | 52.38 |
| KRH29763 | Soybean | nucleus | 46.87 | 51.8 |
| PGSC0003DMT400005512 | Potato | mitochondrion | 49.87 | 51.55 |
| Solyc06g005650.2.1 | Tomato | extracellular | 25.31 | 50.5 |
| Solyc04g011610.1.1 | Tomato | nucleus | 48.87 | 49.37 |
| KRH30994 | Soybean | nucleus | 48.62 | 49.36 |
| PGSC0003DMT400016233 | Potato | nucleus | 48.62 | 49.24 |
| CDY20473 | Canola | nucleus, plastid | 40.85 | 48.8 |
| Bra005020.1-P | Field mustard | nucleus, plastid | 40.1 | 46.92 |
| CDX74839 | Canola | cytosol, plastid | 37.84 | 46.6 |
| CDY53450 | Canola | cytosol | 36.84 | 45.65 |
| CDX80258 | Canola | plastid | 40.6 | 45.63 |
| Bra000143.1-P | Field mustard | nucleus | 42.61 | 45.33 |
| CDY07641 | Canola | nucleus | 42.36 | 45.19 |
| CDY24951 | Canola | nucleus | 42.11 | 44.8 |
| CDY61251 | Canola | cytosol | 39.6 | 43.77 |
| Bra019382.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 40.6 | 43.43 |
| Bra006709.1-P | Field mustard | plastid | 42.61 | 43.26 |
| Bra020313.1-P | Field mustard | plastid | 42.11 | 43.19 |
| CDX88709 | Canola | cytosol, plastid | 42.61 | 43.15 |
| AT2G39720.2 | Thale cress | nucleus | 42.86 | 42.64 |
| Bra002559.1-P | Field mustard | plastid | 42.36 | 42.57 |
| CDY48679 | Canola | cytosol, plastid | 35.59 | 42.52 |
| CDX99105 | Canola | cytosol, plastid | 34.34 | 42.28 |
| KRH15082 | Soybean | nucleus | 40.35 | 42.15 |
| CDY33046 | Canola | plastid | 35.84 | 41.81 |
| KRH73053 | Soybean | nucleus | 40.35 | 41.18 |
| AT3G46620.1 | Thale cress | cytosol, plastid | 40.1 | 40.51 |
| AT5G59550.2 | Thale cress | nucleus, plastid | 42.61 | 33.2 |
| TraesCS3B01G474100.1 | Wheat | mitochondrion | 22.06 | 30.56 |
| TraesCS1B01G179000.1 | Wheat | cytosol, mitochondrion, plastid, vacuole | 25.31 | 27.37 |
| TraesCS7B01G074800.1 | Wheat | mitochondrion | 21.05 | 26.09 |
| TraesCS6B01G361600.1 | Wheat | mitochondrion | 21.3 | 25.22 |
| TraesCS3B01G361000.1 | Wheat | cytosol | 21.55 | 25.07 |
| TraesCS7B01G144100.1 | Wheat | plastid | 15.79 | 23.42 |
| TraesCS6B01G318600.1 | Wheat | cytosol, plastid | 17.54 | 22.8 |
| TraesCS3B01G218400.1 | Wheat | cytosol | 21.05 | 22.58 |
| TraesCS4B01G174800.1 | Wheat | cytosol | 19.3 | 22.0 |
| TraesCS5B01G480100.1 | Wheat | nucleus | 22.06 | 21.89 |
| TraesCS1B01G316300.1 | Wheat | nucleus | 17.79 | 21.39 |
| TraesCS7B01G293600.1 | Wheat | cytosol | 14.79 | 17.88 |
| TraesCS6B01G198800.1 | Wheat | nucleus | 16.04 | 15.96 |
| TraesCS5B01G144700.1 | Wheat | nucleus | 17.54 | 13.73 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G036900.1 | EnsemblPlantsGene:TraesCS1B01G036900 | Gene3D:3.30.40.10 | InterPro:DUF1117 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR44274 | PANTHER:PTHR44274:SF3 | PFAM:PF06547 | PFAM:PF13639 |
| PFAM:PF14369 | PFscan:PS50089 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | TIGR:cd16667 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr1B:-:17623097..17624296
Molecular Weight (calculated)
42388.5 Da
IEP (calculated)
6.823
GRAVY (calculated)
-0.410
Length
399 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSSPAASAS YWCYSCDRFV RAASSPEGGG DVACPDCGGG FLEEMRRTPP APAYLRRPRA HHANDLRLRR SRRAAAAAAA AASASGGGGG GDRAPFNPVI
101: VLRRSALGVA PGEDNGDDDG ALAAASSFEL FYDDGAGSGL RPLPESMSDF LMGSGFERLL GQLAQIEAGG LTRARETPPA SKAAVESMPT VAIAASHVAA
201: DCHCAVCKEP FELGADAREM PCAHIYHEDC ILPWLQLRNS CPVCRHEMPT DTAAARSQAA SAGAEEETTV GLTIWRLPGG GFAVGRFAGG RRPEERELPV
301: VYTEMDGGFN HGGAPRRISW GSRQSRSTER SAIRRIFRNM FACFGRGHSA SSHASSSQMR PEEMTEASDH SAAFSHGSRS RSMSWRLEDG HAADTMVQR
101: VLRRSALGVA PGEDNGDDDG ALAAASSFEL FYDDGAGSGL RPLPESMSDF LMGSGFERLL GQLAQIEAGG LTRARETPPA SKAAVESMPT VAIAASHVAA
201: DCHCAVCKEP FELGADAREM PCAHIYHEDC ILPWLQLRNS CPVCRHEMPT DTAAARSQAA SAGAEEETTV GLTIWRLPGG GFAVGRFAGG RRPEERELPV
301: VYTEMDGGFN HGGAPRRISW GSRQSRSTER SAIRRIFRNM FACFGRGHSA SSHASSSQMR PEEMTEASDH SAAFSHGSRS RSMSWRLEDG HAADTMVQR
001: MMPNSRSATI TPTTESTTTT TTTTTTLTTS YWCYSCTRFI SVWEDQDANA GVLCPYCNGG FIEEIEDSSN STVAAIPAST PEVRSVEETH RSIIRRRRSN
101: RRTSFNPVIV LHGGGGGGAG ERVENEEGDG ATRERRAYEF YYDDGSGSGL RPLPDSVSEI LMGSGFERLL EQLSQIEASG NGIGRSGNPP ASKSAIESLP
201: RVEISDCHTK AEANCAVCTE VFEAGIEGRE MPCKHIFHGD CIVPWLSIRN SCPVCRFELP SDPIQRSNEE EHAVGMTIWR LPGGGFAVGR FNAGVREGER
301: ILPVVLTEMD GGGLGSNEGP RRISWVRAHE TPEMSRNGGR SGNGGRLRRA VRGMVSFMRR VRPSRGSSNS NVIDLDSDGE TRVMNRSTSL IRRFF
101: RRTSFNPVIV LHGGGGGGAG ERVENEEGDG ATRERRAYEF YYDDGSGSGL RPLPDSVSEI LMGSGFERLL EQLSQIEASG NGIGRSGNPP ASKSAIESLP
201: RVEISDCHTK AEANCAVCTE VFEAGIEGRE MPCKHIFHGD CIVPWLSIRN SCPVCRFELP SDPIQRSNEE EHAVGMTIWR LPGGGFAVGR FNAGVREGER
301: ILPVVLTEMD GGGLGSNEGP RRISWVRAHE TPEMSRNGGR SGNGGRLRRA VRGMVSFMRR VRPSRGSSNS NVIDLDSDGE TRVMNRSTSL IRRFF
Arabidopsis Description
RDUF1E3 ubiquitin-protein ligase RDUF1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SNB6]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.