Factsheet for HORVU1Hr1G004330.14

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G036900.1	Wheat	cytosol	92.52	92.98
TraesCS1A01G029800.1	Wheat	cytosol	92.02	92.48
TraesCS1D01G030300.1	Wheat	nucleus	92.52	92.29
Os05t0110000-01	Rice	mitochondrion	70.57	84.98
Zm00001d035677_P001	Maize	plastid	62.84	72.41
EES17560	Sorghum	plastid	70.32	68.28
Zm00001d011076_P001	Maize	plastid	64.59	66.93
HORVU7Hr1G055010.1	Barley	cytosol	33.92	61.54
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	52.37	59.83
HORVU3Hr1G041030.1	Barley	mitochondrion	55.61	57.62
GSMUA_Achr6P23590_001	Banana	mitochondrion, nucleus	48.38	56.4
VIT_06s0004g05090.t01	Wine grape	mitochondrion, nucleus	53.62	55.7
Os01t0972000-01	Rice	nucleus	46.13	55.39
KRH23103	Soybean	nucleus	43.14	55.1
KRH10229	Soybean	nucleus	42.89	54.78
HORVU3Hr1G115000.7	Barley	mitochondrion	53.12	54.34
KRH24759	Soybean	nucleus	48.38	53.74
KRH29763	Soybean	nucleus	47.63	52.91
KRG97885	Soybean	mitochondrion	46.38	52.1
PGSC0003DMT400005512	Potato	mitochondrion	49.38	51.3
Solyc06g005650.2.1	Tomato	extracellular	25.19	50.5
KRH30994	Soybean	nucleus	48.13	49.11
Solyc04g011610.1.1	Tomato	nucleus	48.13	48.86
PGSC0003DMT400016233	Potato	nucleus	47.88	48.73
CDY20473	Canola	nucleus, plastid	40.4	48.5
HORVU4Hr1G060130.1	Barley	cytosol	41.9	47.73
Bra005020.1-P	Field mustard	nucleus, plastid	39.65	46.63
CDX74839	Canola	cytosol, plastid	37.41	46.3
CDY53450	Canola	cytosol	36.91	45.96
CDX80258	Canola	plastid	40.4	45.63
Bra000143.1-P	Field mustard	nucleus	41.65	44.53
CDY07641	Canola	nucleus	41.4	44.38
CDY24951	Canola	nucleus	41.15	44.0
CDY61251	Canola	cytosol	39.4	43.77
Bra020313.1-P	Field mustard	plastid	42.14	43.44
Bra006709.1-P	Field mustard	plastid	42.39	43.26
Bra019382.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	40.15	43.16
CDX88709	Canola	cytosol, plastid	42.39	43.15
Bra002559.1-P	Field mustard	plastid	42.14	42.57
CDY48679	Canola	cytosol, plastid	35.41	42.52
AT2G39720.2	Thale cress	nucleus	42.39	42.39
CDX99105	Canola	cytosol, plastid	33.92	41.98
CDY33046	Canola	plastid	35.41	41.52
KRH15082	Soybean	nucleus	39.4	41.36
AT3G46620.1	Thale cress	cytosol, plastid	39.9	40.51
KRH73053	Soybean	nucleus	39.4	40.41
AT5G59550.2	Thale cress	nucleus, plastid	42.39	33.2
HORVU3Hr1G096110.1	Barley	mitochondrion	21.45	29.76
HORVU1Hr1G043220.1	Barley	cytosol, mitochondrion, plastid, vacuole	25.44	27.79
HORVU0Hr1G019650.1	Barley	mitochondrion	20.95	26.5
HORVU7Hr1G000850.1	Barley	cytosol, mitochondrion, nucleus	23.44	26.33
HORVU6Hr1G080320.2	Barley	cytosol, mitochondrion	21.7	26.13
HORVU4Hr1G051610.2	Barley	cytosol	18.7	21.74
HORVU3Hr1G039220.1	Barley	cytosol	20.2	21.49
HORVU5Hr1G111530.1	Barley	nucleus	21.2	21.36
HORVU6Hr1G072430.1	Barley	cytosol	18.7	20.6
HORVU1Hr1G068950.2	Barley	golgi	19.2	19.95
HORVU6Hr1G034800.1	Barley	cytosol, nucleus	17.21	18.65
HORVU7Hr1G092570.1	Barley	cytosol	14.96	15.67

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	UniProt:A0A287EI21	InterPro:DUF1117	EnsemblPlantsGene:HORVU1Hr1G004330	EnsemblPlants:HORVU1Hr1G004330.14
InterPro:IPR001841	InterPro:IPR013083	PFAM:PF06547	PFAM:PF13639	PFAM:PF14369	PFscan:PS50089
PANTHER:PTHR44274	PANTHER:PTHR44274:SF3	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000B4859B3	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrchr1H:-:9080743..9083053

Molecular Weight (calculated)

42715.9 Da

IEP (calculated)

6.864

GRAVY (calculated)

-0.439

Length

401 amino acids

Sequence
(BLAST)

001: MDSSPAATAP ASYWCYSCDR FVRAAPAQDG ADVACPGCGG GFLEEMRRNP PPPAAAAYLR RPRAHHANDL RLRRSRRAAA AAAAASGGGG GGGGDRAPFN
101: PVIVLRRSAL GVPAGDESND DDGALAAASS FELFYDDGAG SGLRPLPESM SDFLMGSGFE RLLGQLAQIE AGGLTRSRET PPASKAAVES MPTVAIAASH
201: VAADCHCAVC KEPFELGAEA REMPCAHIYH EDCILPWLQL RNSCPVCRHE MPTDTTSRPQ AASAGAEEET TVGLTIWRLP GGGFAVGRFA GGRRPEEREL
301: PVVYTEMDGG FNHGGAPRRI SWGSRQSRST ERSAIRRVFR NMFACFGRDH SASSHASSSH MRPEEMTEAS DHSAAFSHGS RSRSMSWRLE DGHAADTMVQ
401: R

Best Arabidopsis Sequence Match ( AT3G46620.1 )
(BLAST)

001: MMPNSRSATI TPTTESTTTT TTTTTTLTTS YWCYSCTRFI SVWEDQDANA GVLCPYCNGG FIEEIEDSSN STVAAIPAST PEVRSVEETH RSIIRRRRSN
101: RRTSFNPVIV LHGGGGGGAG ERVENEEGDG ATRERRAYEF YYDDGSGSGL RPLPDSVSEI LMGSGFERLL EQLSQIEASG NGIGRSGNPP ASKSAIESLP
201: RVEISDCHTK AEANCAVCTE VFEAGIEGRE MPCKHIFHGD CIVPWLSIRN SCPVCRFELP SDPIQRSNEE EHAVGMTIWR LPGGGFAVGR FNAGVREGER
301: ILPVVLTEMD GGGLGSNEGP RRISWVRAHE TPEMSRNGGR SGNGGRLRRA VRGMVSFMRR VRPSRGSSNS NVIDLDSDGE TRVMNRSTSL IRRFF

Arabidopsis Description

RDUF1E3 ubiquitin-protein ligase RDUF1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SNB6]
SUBAcon: [cytosol,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.