CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra005020.1-P	Field mustard	nucleus, plastid	99.38	94.43
CDY20473	Canola	nucleus, plastid	91.98	89.22
CDY07641	Canola	nucleus	81.48	70.59
CDY24951	Canola	nucleus	81.17	70.13
Os03t0271600-01	Rice	plastid	44.14	51.25
Zm00001d028590_P001	Maize	plastid	42.9	50.0
TraesCS4D01G209500.1	Wheat	plastid	43.21	50.0
TraesCS4B01G209100.1	Wheat	plastid	43.21	50.0
Zm00001d047824_P001	Maize	plastid	42.9	50.0
TraesCS4A01G095800.1	Wheat	cytosol	43.21	50.0
EER95109	Sorghum	plastid	42.28	49.82
GSMUA_Achr7P15040_001	Banana	mitochondrion	44.75	45.89
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	47.22	43.59
GSMUA_Achr10P...	Banana	mitochondrion	44.44	42.73
CDY53450	Canola	cytosol	41.67	41.93
Zm00001d035677_P001	Maize	plastid	44.75	41.67
GSMUA_Achr6P23590_001	Banana	mitochondrion, nucleus	43.83	41.28
Os05t0110000-01	Rice	mitochondrion	42.28	41.14
GSMUA_Achr5P07070_001	Banana	nucleus	41.05	40.43
TraesCS3D01G532300.1	Wheat	cytosol	48.15	40.41
KRH15082	Soybean	nucleus	47.53	40.31
KRH73053	Soybean	nucleus	48.15	39.9
Os01t0972000-01	Rice	nucleus	41.05	39.82
GSMUA_Achr2P19140_001	Banana	mitochondrion	44.44	39.78
HORVU4Hr1G060130.1	Barley	cytosol	43.21	39.77
TraesCS3B01G595200.1	Wheat	cytosol	48.46	39.35
CDX80258	Canola	plastid	42.59	38.87
CDY48679	Canola	cytosol, plastid	39.81	38.62
CDY33046	Canola	plastid	40.43	38.3
TraesCS1B01G036900.1	Wheat	cytosol	46.6	37.84
TraesCS1D01G030300.1	Wheat	nucleus	46.91	37.81
TraesCS1A01G029800.1	Wheat	cytosol	46.3	37.59
GSMUA_Achr10P...	Banana	mitochondrion	46.6	37.56
HORVU1Hr1G004330.14	Barley	cytosol	46.3	37.41
CDX99105	Canola	cytosol, plastid	37.35	37.35
Zm00001d011076_P001	Maize	plastid	44.44	37.21
CDY61251	Canola	cytosol	41.36	37.12
EES17560	Sorghum	plastid	46.6	36.56
HORVU7Hr1G055010.1	Barley	cytosol	24.69	36.2
CDX88709	Canola	cytosol, plastid	42.9	35.28
HORVU3Hr1G041030.1	Barley	mitochondrion	41.98	35.14
GSMUA_Achr10P...	Banana	nucleus	30.56	35.11
HORVU3Hr1G115000.7	Barley	mitochondrion	41.05	33.93
CDY72364	Canola	cytosol	20.06	29.28
CDY36069	Canola	cytosol	19.44	29.03
CDX82271	Canola	cytosol	18.21	27.7
CDX75998	Canola	nucleus	16.36	27.6
CDY22483	Canola	mitochondrion	25.0	26.73
CDX74533	Canola	cytosol	22.84	25.34
CDY33437	Canola	cytosol	25.31	25.31
CDY24592	Canola	nucleus	25.0	25.23
CDY35437	Canola	mitochondrion, nucleus	24.38	24.92
CDY25360	Canola	cytosol, nucleus, plastid	24.69	24.77
CDX94665	Canola	nucleus	17.59	24.26
CDY68603	Canola	cytosol	17.9	23.97
CDY01669	Canola	plastid	23.77	23.84
CDY32333	Canola	cytosol	17.28	23.83
CDY27204	Canola	mitochondrion, nucleus	22.84	23.72
CDX79968	Canola	mitochondrion, nucleus	21.6	23.57
CDX72127	Canola	mitochondrion	22.84	23.42
CDY22790	Canola	nucleus	19.44	23.33
CDY23878	Canola	mitochondrion, nucleus	21.91	23.28
CDY10554	Canola	cytosol	20.68	21.97
CDY18690	Canola	cytosol, peroxisome, plastid	19.75	21.4
CDX81263	Canola	cytosol, peroxisome, plastid	19.14	21.38
CDY50031	Canola	cytosol	19.14	21.38
CDX94901	Canola	cytosol	20.06	20.7
CDY46577	Canola	nucleus	18.52	20.62
CDY56081	Canola	nucleus	15.12	20.5
CDY56022	Canola	nucleus	19.75	20.45
CDY56080	Canola	cytosol	17.9	20.42
CDY42507	Canola	cytosol	21.3	20.35
CDY26096	Canola	nucleus	17.59	19.39
CDX92768	Canola	nucleus	18.21	19.09
CDY43991	Canola	nucleus	17.9	18.77
CDY01221	Canola	cytosol	12.35	18.35
CDY42740	Canola	nucleus	18.21	18.32
CDX92770	Canola	nucleus	18.21	18.21
CDY32791	Canola	nucleus	19.14	17.61
CDY08249	Canola	cytosol	18.21	17.61
CDY28208	Canola	cytosol	12.04	16.81
CDX89343	Canola	cytosol, mitochondrion	16.98	15.62
CDY58938	Canola	nucleus	20.99	15.42
CDX78323	Canola	cytosol	13.58	15.28
CDY03622	Canola	nucleus	20.99	15.25
CDX94342	Canola	mitochondrion, nucleus	18.21	15.25
CDY69134	Canola	cytosol	13.27	14.78
CDY02194	Canola	peroxisome	17.28	14.07
CDY51628	Canola	peroxisome	17.59	14.04
CDY34721	Canola	cytosol	16.36	13.59
CDY34722	Canola	cytosol	15.74	13.08
CDY26465	Canola	cytosol	13.58	12.98
CDY21513	Canola	cytosol	14.2	12.92
CDX69973	Canola	cytosol	13.89	12.5
CDX90972	Canola	cytosol	12.65	12.24
CDX69496	Canola	cytosol	10.49	11.81
CDX85531	Canola	cytosol	12.35	11.66
CDY11934	Canola	nucleus	20.99	10.43
CDY23599	Canola	golgi, mitochondrion	17.9	9.52

Protein Annotations

EnsemblPlants:CDX74839	EnsemblPlantsGene:GSBRNA2T00116819001	Gene3D:3.30.40.10	GO:A0A078CFC5	InterPro:DUF1117	InterPro:IPR001841
InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR44274	PFAM:PF06547	PFAM:PF13639
PFAM:PF14369	PFscan:PS50089	ProteinID:CDX74839	ProteinID:CDX74839.1	SEG:seg	SMART:SM00184
SUPFAM:SSF57850	UniParc:UPI0004EF191F	MapMan:35.1	:	:	:

Description

BnaA05g05850D

Coordinates

chrLK031802:+:904120..905220

Molecular Weight (calculated)

35051.0 Da

IEP (calculated)

7.875

GRAVY (calculated)

-0.482

Length

324 amino acids

Sequence
(BLAST)

001: MASGSHWCYS CSRFVLITNS ISCPDCDGGF LEHLHQTPDS FHRQHRSPTR FPTPPTSNRS PNPVIVLRGS NPSDRSPFQM YYDDGSDSGL RPLPPSMTEF
101: LLGSGNNSCD HPPASKSAIE ALPVIQIAPT HLESDSQSHC AVCKETFILD SAAREMPCNH IYHPDCILPW LAIRNSCPVC RHELPAEEED DVAAATVAGR
201: EEAGEEDSSA GMTIWRLPGG GFAVGRVPGG WRGGMPVVYT EVDGGRLGEE RLPRRVARRG GSSRERSGGF AGRIMRLFGC FSGSSGSIAS GSGSGSGSRS
301: NRRSRSSFAL FRTASSRRRH WLAS

Best Arabidopsis Sequence Match ( AT2G39720.2 )
(BLAST)

001: MASGSYWCYS CSRFVWVSDS ISCPDCDGGF LELIQEPLDF TPSDSFTTTT TTQHRSPTRF PPPSSSSSTP SASMHADNSP TPTIVTRTRS NRSPNPVIVL
101: RGSAAAPSSD VVSEGLDRSA FQMYYDDGTD SGLRPLPPSM TEFLLGSGFD RLLDQISQIE LNTNRNLRSC EHPPASKSAI EALPLIEIDP THLLSDSQSH
201: CAVCKENFVL KSSAREMPCN HIYHPDCILP WLAIRNSCPV CRHELPAEDL TDGTGAALTA VTATAEEEED SAAGLTIWRL PGGGFAVGRI PGGWRGGDRM
301: MPVVYTEVDG GRLGDERLPR RVAWGSRRGG RDGGGSRERG GGFAGRIMRL FGCFSGSSGS IAAAAAASSG SGSRIRVTRR TRSFSMFSTA SSSSRRRNWL
401: A

Arabidopsis Description

RHC2AProbable E3 ubiquitin-protein ligase RHC2A [Source:UniProtKB/Swiss-Prot;Acc:O22283]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.