CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, mitochondrion

Predictor Summary:

nucleus 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000207.1-P	Field mustard	mitochondrion, nucleus	100.0	100.0
CDY22483	Canola	mitochondrion	90.54	94.72
AT2G40830.4	Thale cress	mitochondrion	88.96	85.98
CDX79968	Canola	mitochondrion, nucleus	77.92	83.17
CDY23878	Canola	mitochondrion, nucleus	79.81	82.95
CDY27204	Canola	mitochondrion, nucleus	60.57	61.54
CDX72127	Canola	mitochondrion	60.57	60.76
CDX75998	Canola	nucleus	35.96	59.38
KRH71659	Soybean	nucleus	55.84	57.28
KRH33121	Soybean	nucleus	55.84	57.28
VIT_08s0040g00590.t01	Wine grape	nucleus	55.2	55.73
CDX94901	Canola	cytosol	52.68	53.18
VIT_06s0009g02350.t01	Wine grape	mitochondrion	53.0	50.0
GSMUA_AchrUn_...	Banana	nucleus	40.69	50.0
EER92269	Sorghum	nucleus	43.22	48.07
KRH14643	Soybean	nucleus	50.79	47.92
Os03t0351800-01	Rice	nucleus	42.59	47.7
TraesCS3A01G440000.1	Wheat	mitochondrion	43.22	47.4
TraesCS3D01G432800.1	Wheat	mitochondrion	43.22	47.4
TraesCS3B01G474100.1	Wheat	mitochondrion	42.9	47.22
PGSC0003DMT400058464	Potato	nucleus	47.0	46.86
Solyc01g009000.2.1	Tomato	plastid	47.0	46.86
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus, plastid	38.17	46.72
HORVU3Hr1G096110.1	Barley	mitochondrion	42.27	46.37
Zm00001d047476_P001	Maize	mitochondrion	42.27	45.89
GSMUA_Achr8P09890_001	Banana	nucleus	33.44	45.89
KRH18631	Soybean	nucleus	42.27	43.79
PGSC0003DMT400079301	Potato	nucleus	40.06	42.33
Solyc08g075910.1.1	Tomato	nucleus	39.75	41.86
KRH73496	Soybean	mitochondrion	48.27	41.24
GSMUA_Achr11P...	Banana	mitochondrion	37.85	40.13
KRH18634	Soybean	nucleus	28.08	37.71
CDY72364	Canola	cytosol	24.61	35.14
CDY36069	Canola	cytosol	23.97	35.02
CDX82271	Canola	cytosol	23.34	34.74
CDY33437	Canola	cytosol	29.97	29.32
CDY46577	Canola	nucleus	26.81	29.21
CDY24592	Canola	nucleus	29.02	28.66
CDY22790	Canola	nucleus	23.66	27.78
CDY25360	Canola	cytosol, nucleus, plastid	28.08	27.55
CDX74533	Canola	cytosol	24.29	26.37
CDY56081	Canola	nucleus	19.56	25.94
CDY10554	Canola	cytosol	24.29	25.25
CDX92768	Canola	nucleus	24.61	25.24
CDY26096	Canola	nucleus	23.34	25.17
CDY32791	Canola	nucleus	27.76	25.0
CDY20473	Canola	nucleus, plastid	25.87	24.55
CDY50031	Canola	cytosol	22.4	24.48
CDY01669	Canola	plastid	24.92	24.46
CDX74839	Canola	cytosol, plastid	24.92	24.38
CDY42507	Canola	cytosol	25.87	24.19
CDX92770	Canola	nucleus	24.61	24.07
CDY08249	Canola	cytosol	25.24	23.88
CDX94665	Canola	nucleus	17.67	23.83
CDY53450	Canola	cytosol	23.97	23.6
CDY42740	Canola	nucleus	23.97	23.6
CDY68603	Canola	cytosol	17.98	23.55
CDX80258	Canola	plastid	26.18	23.38
CDY56022	Canola	nucleus	23.03	23.32
CDY61251	Canola	cytosol	26.18	22.99
CDY24951	Canola	nucleus	27.13	22.93
CDY56080	Canola	cytosol	20.5	22.89
CDY43991	Canola	nucleus	22.08	22.65
CDY07641	Canola	nucleus	26.18	22.19
CDY32333	Canola	cytosol	16.4	22.13
CDX99105	Canola	cytosol, plastid	22.4	21.91
CDY48679	Canola	cytosol, plastid	23.03	21.86
CDX81263	Canola	cytosol, peroxisome, plastid	19.87	21.72
CDX89343	Canola	cytosol, mitochondrion	23.97	21.59
CDY18690	Canola	cytosol, peroxisome, plastid	20.19	21.4
CDY28208	Canola	cytosol	15.46	21.12
CDY33046	Canola	plastid	22.4	20.76
CDX88709	Canola	cytosol, plastid	25.24	20.3
CDX94342	Canola	mitochondrion, nucleus	24.29	19.9
CDY69134	Canola	cytosol	16.09	17.53
CDX78323	Canola	cytosol	15.46	17.01
CDY58938	Canola	nucleus	23.34	16.78
CDY03622	Canola	nucleus	23.34	16.59
CDY21513	Canola	cytosol	18.61	16.57
CDX69973	Canola	cytosol	18.3	16.11
CDY01221	Canola	cytosol	11.04	16.05
CDY51628	Canola	peroxisome	17.98	14.04
CDY02194	Canola	peroxisome	17.35	13.82
CDX69496	Canola	cytosol	12.3	13.54
CDY11934	Canola	nucleus	26.81	13.04
CDX85531	Canola	cytosol	13.88	12.83
CDY34722	Canola	cytosol	15.77	12.82
CDY34721	Canola	cytosol	15.77	12.82
CDX90972	Canola	cytosol	13.25	12.54
CDY26465	Canola	cytosol	12.3	11.5
CDY23599	Canola	golgi, mitochondrion	21.45	11.17

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	GO:A0A078HCC0	UniProt:A0A078HCC0	EnsemblPlants:CDY35437	ProteinID:CDY35437
ProteinID:CDY35437.1	EnsemblPlantsGene:GSBRNA2T00058436001	InterPro:IPR001841	InterPro:IPR013083	PFAM:PF13639	PFAM:PF14369
PFscan:PS50089	PANTHER:PTHR44290	PANTHER:PTHR44290:SF1	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI00025402E5
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

BnaA03g19230DBnaA03g19230D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HCC0]

Coordinates

chrLK032351:-:357232..358912

Molecular Weight (calculated)

35063.4 Da

IEP (calculated)

7.733

GRAVY (calculated)

-0.814

Length

317 amino acids

Sequence
(BLAST)

001: MSSGGNTHWC HRCQRAVRLH GRDPVCSYCG GGFVELLEIP QASPFDMFRS HRDVVERDPT FDLMDALSDF MRNRETRGRS ISSGPENFPG LAPLLIFGGQ
101: VPYRLSGVEA LFNGGSPGIG ITRGNNTGDY FFGPGLEELF EQLSAGTTTR RGPPPAPRSS IDALPTIKIA QRHLRSSDSN CAVCKDEFEL GTEAKQMPCN
201: HIYHSDCIVP WLVQHNSCPV CRQELPSGRG SSSSQNRTTT RNNRSSSSSS GNSRESSNER RNPFSSFWPF RSSGSTSNST QNRGGTRNSD GTDENHNYHQ
301: QQQQQSHMGY GGWPFDY

Best Arabidopsis Sequence Match ( AT2G40830.2 )
(BLAST)

001: MSSSRNTHWC HRCQRAVRLH GQEPVCFYCG GGFVEELDMA QASPFDMFRS HRGVVERDQT FDLMDAFSVF MRNRLAERSH DREIRGRTIS SGPENFPGLA
101: PLLIFGGQVP YRLTGDNAVE ALFNGGSPGI GITRGNTGDY FFGPGLEELF EQLSAGTTRR GPPPAPRSAI DALPTIKIAQ RHLRSSDSNC PVCKDEFELG
201: SEAKQMPCNH IYHSDCIVPW LVQHNSCPVC RQELPSASGP SSSQNRTTPT RNYRSSSSSS SSNSRENGNE RRNPFSSFWP FRSSGSSSSS TQNRGGTRNS
301: DTSDENHNYH QQQHQQSYMG YSGWPFDY

Arabidopsis Description

RHC1AProbable E3 ubiquitin-protein ligase RHC1A [Source:UniProtKB/Swiss-Prot;Acc:O22197]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.