Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH18631 | Soybean | nucleus | 59.32 | 45.75 |
| KRH14643 | Soybean | nucleus | 55.93 | 39.29 |
| GSMUA_Achr8P09890_001 | Banana | nucleus | 37.29 | 38.1 |
| KRH71659 | Soybean | nucleus | 45.76 | 34.95 |
| KRH33121 | Soybean | nucleus | 45.34 | 34.63 |
| KRH73496 | Soybean | mitochondrion | 54.24 | 34.5 |
| GSMUA_AchrUn_... | Banana | cytosol, mitochondrion, nucleus, plastid | 37.71 | 34.36 |
| Os03t0351800-01 | Rice | nucleus | 39.83 | 33.22 |
| EER92269 | Sorghum | nucleus | 39.83 | 32.98 |
| TraesCS3A01G440000.1 | Wheat | mitochondrion | 39.83 | 32.53 |
| TraesCS3D01G432800.1 | Wheat | mitochondrion | 39.41 | 32.18 |
| TraesCS3B01G474100.1 | Wheat | mitochondrion | 38.98 | 31.94 |
| Zm00001d047476_P001 | Maize | mitochondrion | 39.41 | 31.85 |
| GSMUA_AchrUn_... | Banana | nucleus | 34.75 | 31.78 |
| HORVU3Hr1G096110.1 | Barley | mitochondrion | 37.71 | 30.8 |
| CDX75998 | Canola | nucleus | 23.73 | 29.17 |
| Bra014684.1-P | Field mustard | nucleus | 23.73 | 29.17 |
| CDX79968 | Canola | mitochondrion, nucleus | 36.02 | 28.62 |
| CDY35437 | Canola | mitochondrion, nucleus | 37.71 | 28.08 |
| Bra000207.1-P | Field mustard | mitochondrion, nucleus | 37.71 | 28.08 |
| CDY22483 | Canola | mitochondrion | 36.02 | 28.05 |
| Bra004589.1-P | Field mustard | nucleus | 28.81 | 27.87 |
| CDY23878 | Canola | mitochondrion, nucleus | 35.59 | 27.54 |
| Bra007253.1-P | Field mustard | mitochondrion, nucleus | 35.59 | 27.1 |
| AT3G56580.1 | Thale cress | mitochondrion | 36.44 | 26.88 |
| AT2G40830.4 | Thale cress | mitochondrion | 37.29 | 26.83 |
| GSMUA_Achr11P... | Banana | mitochondrion | 33.9 | 26.76 |
| CDY27204 | Canola | mitochondrion, nucleus | 35.17 | 26.6 |
| CDX72127 | Canola | mitochondrion | 35.59 | 26.58 |
| CDX94901 | Canola | cytosol | 29.66 | 22.29 |
| KRH10229 | Soybean | nucleus | 27.12 | 20.38 |
| KRH49133 | Soybean | plastid | 26.27 | 20.2 |
| KRG99997 | Soybean | plastid | 26.69 | 20.19 |
| KRH23103 | Soybean | nucleus | 26.69 | 20.06 |
| KRG90622 | Soybean | nucleus | 24.58 | 19.46 |
| KRH36132 | Soybean | nucleus | 23.31 | 19.23 |
| KRH10441 | Soybean | mitochondrion | 25.85 | 19.0 |
| KRH29763 | Soybean | nucleus | 28.81 | 18.84 |
| KRH64713 | Soybean | nucleus | 27.97 | 18.75 |
| KRH44018 | Soybean | mitochondrion | 25.0 | 18.61 |
| KRH30994 | Soybean | nucleus | 30.08 | 18.07 |
| KRH24759 | Soybean | nucleus | 27.54 | 18.01 |
| KRG97885 | Soybean | mitochondrion | 26.69 | 17.65 |
| KRH70139 | Soybean | nucleus | 23.31 | 17.24 |
| KRG97316 | Soybean | nucleus | 24.15 | 16.57 |
| KRH08483 | Soybean | cytosol, nucleus, plastid | 22.46 | 16.46 |
| KRH09399 | Soybean | nucleus | 25.0 | 15.99 |
| KRH15082 | Soybean | nucleus | 25.85 | 15.97 |
| KRG90607 | Soybean | nucleus | 22.46 | 15.73 |
| KRH38895 | Soybean | nucleus | 25.0 | 15.69 |
| KRH36150 | Soybean | nucleus | 22.03 | 15.62 |
| KRH73053 | Soybean | nucleus | 25.42 | 15.35 |
| KRH03189 | Soybean | nucleus | 18.22 | 12.11 |
| KRH56750 | Soybean | cytosol | 17.37 | 11.99 |
| KRG93748 | Soybean | nucleus, plastid | 16.95 | 10.53 |
| KRH18313 | Soybean | nucleus | 16.53 | 10.43 |
| KRH40635 | Soybean | nucleus, plastid | 19.49 | 8.35 |
| KRH00522 | Soybean | plastid | 19.49 | 8.23 |
Protein Annotations
| EntrezGene:100815972 | Gene3D:3.30.40.10 | MapMan:35.1 | EMBL:ACUP02008109 | EnsemblPlantsGene:GLYMA_13G072900 | GO:GO:0000209 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0042787 | GO:GO:0043161 | GO:GO:0061630 |
| UniProt:I1LWC2 | InterPro:IPR001841 | InterPro:IPR013083 | ProteinID:KRH18632.1 | ProteinID:KRH18633.1 | EnsemblPlants:KRH18634 |
| ProteinID:KRH18634 | ProteinID:KRH18634.1 | PFAM:PF13639 | PFAM:PF14369 | PFscan:PS50089 | PANTHER:PTHR44290 |
| PANTHER:PTHR44290:SF5 | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI000233BC37 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD |
Description
hypothetical protein
Coordinates
chr13:+:17443279..17446015
Molecular Weight (calculated)
27029.9 Da
IEP (calculated)
7.175
GRAVY (calculated)
-0.575
Length
236 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSGATYWCY TCRQPICLAR RDHICPYCDE GFLQELDELQ GGMEQRGSEP RMGGRYINFG VRRPGSTPLP ESWTRGVFIF PNQEVAADRE GFFEQHITND
101: PLGASQSSID AMPTIKITHE HLYSNPKCSV CIERFEVGSE ARKMPCDHIY HSDCIVPWLV HHNSCPVCRG KLPPEGHVSS RGSQIWRGRN VNGNSENDIY
201: RGRENRQFND GWRNLLSFLN FCGQSFLLIQ ILNRWS
101: PLGASQSSID AMPTIKITHE HLYSNPKCSV CIERFEVGSE ARKMPCDHIY HSDCIVPWLV HHNSCPVCRG KLPPEGHVSS RGSQIWRGRN VNGNSENDIY
201: RGRENRQFND GWRNLLSFLN FCGQSFLLIQ ILNRWS
001: MSSSRNTHWC HRCQRAVRLH GQEPVCFYCG GGFVEELDMA QASPFDMFRS HRGVVERDQT FDLMDAFSVF MRNRLAERSH DREIRGRTIS SGPENFPGLA
101: PLLIFGGQVP YRLTGDNAVE ALFNGGSPGI GITRGNTGDY FFGPGLEELF EQLSAGTTRR GPPPAPRSAI DALPTIKIAQ RHLRSSDSNC PVCKDEFELG
201: SEAKQMPCNH IYHSDCIVPW LVQHNSCPVC RQELPSASGP SSSQNRTTPT RNYRSSSSSS SSNSRENGNE RRNPFSSFWP FRSSGSSSSS TQNRGGTRNS
301: DTSDENHNYH QQQHQQSYMG YSGWPFDY
101: PLLIFGGQVP YRLTGDNAVE ALFNGGSPGI GITRGNTGDY FFGPGLEELF EQLSAGTTRR GPPPAPRSAI DALPTIKIAQ RHLRSSDSNC PVCKDEFELG
201: SEAKQMPCNH IYHSDCIVPW LVQHNSCPVC RQELPSASGP SSSQNRTTPT RNYRSSSSSS SSNSRENGNE RRNPFSSFWP FRSSGSSSSS TQNRGGTRNS
301: DTSDENHNYH QQQHQQSYMG YSGWPFDY
Arabidopsis Description
RHC1AProbable E3 ubiquitin-protein ligase RHC1A [Source:UniProtKB/Swiss-Prot;Acc:O22197]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.