Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G08139.1 | KRH31638 | AT4G14640.1 | 17360592 |
| AT5G08139.1 | KRH69070 | AT4G14640.1 | 17360592 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH03189 | Soybean | nucleus | 86.84 | 83.66 |
| Os06t0633500-01 | Rice | cytosol, nucleus | 13.45 | 37.1 |
| VIT_17s0000g04730.t01 | Wine grape | nucleus | 47.08 | 36.67 |
| CDX69973 | Canola | cytosol | 35.67 | 33.89 |
| PGSC0003DMT400063293 | Potato | nucleus | 42.69 | 33.8 |
| CDX78323 | Canola | cytosol | 27.78 | 32.99 |
| CDY02194 | Canola | peroxisome | 38.01 | 32.66 |
| Bra009323.1-P | Field mustard | cytosol | 35.67 | 32.19 |
| CDY51628 | Canola | peroxisome | 38.01 | 32.02 |
| CDY69134 | Canola | cytosol | 27.19 | 31.96 |
| AT5G08139.1 | Thale cress | cytosol | 35.09 | 31.91 |
| AT5G60820.1 | Thale cress | cytosol | 38.89 | 31.74 |
| Bra005970.1-P | Field mustard | cytosol | 26.9 | 31.72 |
| Bra013006.1-P | Field mustard | nucleus | 38.6 | 31.65 |
| CDY21513 | Canola | cytosol | 32.75 | 31.46 |
| Solyc03g114680.2.1 | Tomato | nucleus | 43.57 | 29.92 |
| KRH18313 | Soybean | nucleus | 32.46 | 29.68 |
| KRG93748 | Soybean | nucleus, plastid | 30.99 | 27.89 |
| GSMUA_Achr8P24510_001 | Banana | cytosol | 31.29 | 27.02 |
| Os08t0487500-01 | Rice | plastid | 19.01 | 23.99 |
| EES14331 | Sorghum | plastid | 19.59 | 22.87 |
| TraesCS7A01G247700.1 | Wheat | cytosol, plastid | 17.84 | 22.68 |
| TraesCS7D01G246300.1 | Wheat | plastid | 17.84 | 22.68 |
| TraesCS7B01G144100.1 | Wheat | plastid | 17.54 | 22.3 |
| TraesCS6A01G288800.1 | Wheat | cytosol, plastid | 19.88 | 22.15 |
| Zm00001d031273_P001 | Maize | cytosol, plastid | 18.71 | 22.15 |
| KRH36150 | Soybean | nucleus | 21.34 | 21.92 |
| KRG90607 | Soybean | nucleus | 21.34 | 21.66 |
| OQU85475 | Sorghum | cytosol | 20.18 | 21.56 |
| TraesCS6B01G318600.1 | Wheat | cytosol, plastid | 19.3 | 21.5 |
| Zm00001d051736_P001 | Maize | cytosol | 20.47 | 21.21 |
| GSMUA_Achr3P06300_001 | Banana | cytosol | 32.16 | 21.07 |
| Os02t0727700-01 | Rice | cytosol, nucleus, plastid | 18.71 | 20.58 |
| KRH36132 | Soybean | nucleus | 16.96 | 20.28 |
| Zm00001d046663_P001 | Maize | cytosol | 16.67 | 19.13 |
| KRH71659 | Soybean | nucleus | 17.25 | 19.09 |
| KRG90622 | Soybean | nucleus | 16.37 | 18.79 |
| KRH33121 | Soybean | nucleus | 16.96 | 18.77 |
| HORVU6Hr1G072430.1 | Barley | cytosol | 19.88 | 18.68 |
| EER90075 | Sorghum | nucleus | 16.08 | 18.15 |
| KRH09399 | Soybean | nucleus | 19.3 | 17.89 |
| KRH18631 | Soybean | nucleus | 15.79 | 17.65 |
| TraesCS7D01G387300.1 | Wheat | cytosol | 16.67 | 17.48 |
| KRH18634 | Soybean | nucleus | 11.99 | 17.37 |
| TraesCS7A01G391700.1 | Wheat | cytosol | 16.67 | 17.22 |
| Os02t0191500-01 | Rice | nucleus | 18.71 | 17.07 |
| OQU84547 | Sorghum | cytoskeleton, cytosol, nucleus | 19.3 | 17.05 |
| KRH38895 | Soybean | nucleus | 18.71 | 17.02 |
| TraesCS7B01G293600.1 | Wheat | cytosol | 16.37 | 16.97 |
| KRH23103 | Soybean | nucleus | 15.5 | 16.88 |
| KRH10229 | Soybean | nucleus | 15.2 | 16.56 |
| Zm00001d053704_P001 | Maize | cytosol | 16.67 | 16.01 |
| KRH10441 | Soybean | mitochondrion | 14.91 | 15.89 |
| TraesCS6D01G160300.1 | Wheat | nucleus | 16.08 | 15.8 |
| KRH14643 | Soybean | nucleus | 15.5 | 15.77 |
| KRG97316 | Soybean | nucleus | 15.79 | 15.7 |
| HORVU7Hr1G092570.1 | Barley | cytosol | 17.25 | 15.4 |
| KRH70139 | Soybean | nucleus | 14.33 | 15.36 |
| KRH49133 | Soybean | plastid | 13.74 | 15.31 |
| KRH08483 | Soybean | cytosol, nucleus, plastid | 14.33 | 15.22 |
| KRH44018 | Soybean | mitochondrion | 14.04 | 15.14 |
| KRH73496 | Soybean | mitochondrion | 16.37 | 15.09 |
| KRG99997 | Soybean | plastid | 13.74 | 15.06 |
| KRH29763 | Soybean | nucleus | 15.79 | 14.96 |
| HORVU6Hr1G034800.1 | Barley | cytosol, nucleus | 16.08 | 14.86 |
| KRH24759 | Soybean | nucleus | 15.2 | 14.4 |
| KRH64713 | Soybean | nucleus | 14.33 | 13.92 |
| TraesCS6B01G198800.1 | Wheat | nucleus | 15.79 | 13.47 |
| KRH30994 | Soybean | nucleus | 14.91 | 12.98 |
| KRH15082 | Soybean | nucleus | 14.33 | 12.83 |
| KRH73053 | Soybean | nucleus | 14.62 | 12.79 |
| KRG97885 | Soybean | mitochondrion | 12.87 | 12.32 |
| KRH40635 | Soybean | nucleus, plastid | 17.84 | 11.07 |
| KRH00522 | Soybean | plastid | 17.84 | 10.91 |
Protein Annotations
| EntrezGene:100794303 | Gene3D:3.30.40.10 | MapMan:35.1 | UniProt:A0A0R0JPQ3 | EMBL:ACUP02002797 | ncoils:Coil |
| EnsemblPlantsGene:GLYMA_05G017500 | GO:GO:0000209 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006464 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0042787 |
| GO:GO:0043161 | GO:GO:0061630 | InterPro:IPR001841 | InterPro:IPR013083 | EnsemblPlants:KRH56750 | ProteinID:KRH56750 |
| ProteinID:KRH56750.1 | PFAM:PF13639 | PFscan:PS50089 | PANTHER:PTHR44679 | SMART:SM00184 | SUPFAM:SSF57850 |
| UniParc:UPI00023C51A0 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr5:-:1533108..1534952
Molecular Weight (calculated)
38407.4 Da
IEP (calculated)
3.717
GRAVY (calculated)
-0.481
Length
342 amino acids
Sequence
(BLAST)
(BLAST)
001: MADVTTYLRH HRDPDPDPDD DDQTLIPFPY WDLDFDFDPE FPTNTFSFTD RENQINFVMD LFHQRVEQSQ LTDPLSNDAV FGVIDGIDLG FPAADDFFIG
101: RRFSVGSDES DGGHSHSHAG IDDGVLGFCA HSDEDYNEND DVASIPLCWD ALQLEDNNNN YDDFEWEEVI DERDVLSMLD DTVSVNLGIE AEAAAAAAEE
201: EEAESEASIL EWQVLLNSNN LEGPNSEPYF GDNEDFVYTA DYEMMLGQFN DDAFNGKPPA SASVVRNLPS VVVTEADVVC AVCKDEFGVG EGVKVLPCSH
301: RYHEDCIVPW LGIRNTCPVC RYEFPTDDAD YERRKAQRSV VM
101: RRFSVGSDES DGGHSHSHAG IDDGVLGFCA HSDEDYNEND DVASIPLCWD ALQLEDNNNN YDDFEWEEVI DERDVLSMLD DTVSVNLGIE AEAAAAAAEE
201: EEAESEASIL EWQVLLNSNN LEGPNSEPYF GDNEDFVYTA DYEMMLGQFN DDAFNGKPPA SASVVRNLPS VVVTEADVVC AVCKDEFGVG EGVKVLPCSH
301: RYHEDCIVPW LGIRNTCPVC RYEFPTDDAD YERRKAQRSV VM
001: MDDLLHQRVE QSQVTPPHDD SNIHGDFDNE ATDESRSETC SVVIEGNCDM VIELGLESGS VIVENLGDSD IDVSNDFDEP DDDDFFVGRT DFGLEFRDIA
101: SSGNDIRLIT VESGSDDDDG VENERELWGI DLNEEDVYVN DDDEYEDDDV SVTIPLCWDS LQLEDREVTA DEFDWEEVGG GGGGGVDDER EIRSGFAQID
201: MNDESLISAS PIISLEGLVT RERAEGSGNL GWEVLLNHTL EINFDVDNRE LYIGGDHDDY VQDYDMLFEQ FADAEVSVIG LPPTSKSFLN NLPVVLLEGE
301: NDDDGGLVCA VCKDEMNIGN KAVQLPCNHK YHSECIVPWL KVRNTCPVCR YELPTDDAEY EQRKTQRTTN TFGMVL
101: SSGNDIRLIT VESGSDDDDG VENERELWGI DLNEEDVYVN DDDEYEDDDV SVTIPLCWDS LQLEDREVTA DEFDWEEVGG GGGGGVDDER EIRSGFAQID
201: MNDESLISAS PIISLEGLVT RERAEGSGNL GWEVLLNHTL EINFDVDNRE LYIGGDHDDY VQDYDMLFEQ FADAEVSVIG LPPTSKSFLN NLPVVLLEGE
301: NDDDGGLVCA VCKDEMNIGN KAVQLPCNHK YHSECIVPWL KVRNTCPVCR YELPTDDAEY EQRKTQRTTN TFGMVL
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8GYG0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.