Factsheet for GSMUA_Achr8P24510_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
mitochondrion 1
plastid 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P04700_001
GSMUA_Achr1P14070_001
GSMUA_Achr1P27230_001
GSMUA_Achr2P12680_001
GSMUA_Achr3P25390_001
GSMUA_Achr4P22570_001
GSMUA_Achr5P09010_001
GSMUA_Achr6P24410_001
GSMUA_Achr7P01390_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G08139.1	GSMUA_Achr1P04700_001	AT4G14640.1	17360592
AT5G08139.1	GSMUA_Achr1P14070_001	AT4G14640.1	17360592
AT5G08139.1	GSMUA_Achr1P27230_001	AT4G14640.1	17360592
AT5G08139.1	GSMUA_Achr2P12680_001	AT4G14640.1	17360592
AT5G08139.1	GSMUA_Achr3P25390_001	AT4G14640.1	17360592
AT5G08139.1	GSMUA_Achr4P22570_001	AT4G14640.1	17360592
AT5G08139.1	GSMUA_Achr5P09010_001	AT4G14640.1	17360592
AT5G08139.1	GSMUA_Achr6P24410_001	AT4G14640.1	17360592
AT5G08139.1	GSMUA_Achr7P01390_001	AT4G14640.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os06t0633500-01	Rice	cytosol, nucleus	14.39	45.97
GSMUA_Achr3P06300_001	Banana	cytosol	56.82	43.1
KRH18313	Soybean	nucleus	34.09	36.1
KRG93748	Soybean	nucleus, plastid	34.09	35.53
Solyc02g089410.2.1	Tomato	nucleus	27.78	33.64
VIT_14s0083g00710.t01	Wine grape	nucleus	32.58	32.99
Solyc02g065650.1.1	Tomato	cytosol, nucleus, plastid	32.32	32.24
PGSC0003DMT400003515	Potato	nucleus	29.55	31.54
KRH56750	Soybean	cytosol	27.02	31.29
KRH03189	Soybean	nucleus	27.78	30.99
PGSC0003DMT400068309	Potato	cytosol	31.06	30.9
VIT_17s0000g04730.t01	Wine grape	nucleus	32.83	29.61
CDX78323	Canola	cytosol	21.46	29.51
Bra005970.1-P	Field mustard	cytosol	20.71	28.28
CDY21513	Canola	cytosol	24.75	27.53
CDY69134	Canola	cytosol	20.2	27.49
CDX69973	Canola	cytosol	24.49	26.94
AT5G08139.1	Thale cress	cytosol	25.25	26.6
OQU85475	Sorghum	cytosol	21.46	26.56
Os02t0727700-01	Rice	cytosol, nucleus, plastid	20.71	26.37
GSMUA_Achr5P19380_001	Banana	plastid	12.63	26.18
PGSC0003DMT400063293	Potato	nucleus	28.54	26.16
TraesCS6B01G318600.1	Wheat	cytosol, plastid	20.2	26.06
AT3G02340.2	Thale cress	cytosol	26.77	25.92
Zm00001d051736_P001	Maize	cytosol	21.46	25.76
CDY34722	Canola	cytosol	25.25	25.64
Bra009323.1-P	Field mustard	cytosol	24.49	25.59
TraesCS6A01G288800.1	Wheat	cytosol, plastid	19.7	25.41
CDY34721	Canola	cytosol	24.75	25.13
Os08t0487500-01	Rice	plastid	17.17	25.09
Bra021467.1-P	Field mustard	nucleus	24.24	24.62
CDY26465	Canola	cytosol	20.96	24.48
CDY02194	Canola	peroxisome	24.49	24.37
CDY51628	Canola	peroxisome	24.75	24.14
Bra013006.1-P	Field mustard	nucleus	25.0	23.74
Solyc03g114680.2.1	Tomato	nucleus	29.55	23.49
TraesCS7B01G144100.1	Wheat	plastid	15.91	23.42
AT5G15820.1	Thale cress	cytosol	20.45	23.28
TraesCS7A01G247700.1	Wheat	cytosol, plastid	15.66	23.05
HORVU6Hr1G072430.1	Barley	cytosol	20.96	22.8
TraesCS7D01G246300.1	Wheat	plastid	15.4	22.68
AT5G60820.1	Thale cress	cytosol	23.99	22.67
Zm00001d031273_P001	Maize	cytosol, plastid	16.16	22.15
Bra008671.1-P	Field mustard	nucleus	15.91	21.95
CDX69496	Canola	cytosol	15.91	21.88
EES14331	Sorghum	plastid	16.16	21.84
Zm00001d046663_P001	Maize	cytosol	16.41	21.81
CDX85531	Canola	cytosol	18.43	21.28
CDX90972	Canola	cytosol	17.93	21.19
EER90075	Sorghum	nucleus	15.66	20.46
GSMUA_Achr9P05060_001	Banana	nucleus	9.34	19.89
GSMUA_Achr11P...	Banana	nucleus	13.38	19.63
Bra023539.1-P	Field mustard	cytoskeleton, cytosol, nucleus	19.19	19.14
GSMUA_AchrUn_...	Banana	nucleus	12.37	18.99
GSMUA_Achr7P13060_001	Banana	mitochondrion	11.62	18.7
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus, plastid	12.12	18.53
TraesCS7A01G391700.1	Wheat	cytosol	15.4	18.43
TraesCS7D01G387300.1	Wheat	cytosol	15.15	18.4
TraesCS6D01G160300.1	Wheat	nucleus	16.16	18.39
GSMUA_Achr8P09890_001	Banana	nucleus	10.61	18.18
TraesCS7B01G293600.1	Wheat	cytosol	15.15	18.18
GSMUA_Achr7P15040_001	Banana	mitochondrion	14.39	18.04
GSMUA_Achr2P03780_001	Banana	cytosol	15.91	17.95
HORVU6Hr1G034800.1	Barley	cytosol, nucleus	16.41	17.57
GSMUA_Achr6P08590_001	Banana	nucleus	12.88	17.41
GSMUA_Achr10P...	Banana	nucleus	12.12	17.02
GSMUA_Achr5P07070_001	Banana	nucleus	14.14	17.02
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	14.9	16.81
OQU84547	Sorghum	cytoskeleton, cytosol, nucleus	16.16	16.54
Zm00001d053704_P001	Maize	cytosol	14.65	16.29
TraesCS6B01G198800.1	Wheat	nucleus	16.41	16.21
HORVU7Hr1G092570.1	Barley	cytosol	15.66	16.19
GSMUA_Achr10P...	Banana	mitochondrion	13.64	16.02
GSMUA_Achr7P18340_001	Banana	nucleus	12.12	16.0
Os02t0191500-01	Rice	nucleus	15.15	16.0
GSMUA_Achr6P23590_001	Banana	mitochondrion, nucleus	13.89	15.99
GSMUA_Achr2P19140_001	Banana	mitochondrion	14.39	15.75
GSMUA_Achr10P...	Banana	nucleus	11.62	15.18
GSMUA_Achr11P...	Banana	mitochondrion	11.36	15.05
GSMUA_Achr5P07680_001	Banana	nucleus	11.11	14.77
GSMUA_Achr4P02460_001	Banana	nucleus	15.4	14.73
GSMUA_Achr10P...	Banana	mitochondrion	13.89	13.68
GSMUA_Achr11P...	Banana	cytosol	16.41	8.97

Protein Annotations

EnsemblPlants:GSMUA_Achr8P24510_001	EnsemblPlants:GSMUA_Achr8T24510_001	EnsemblPlantsGene:GSMUA_Achr8G24510_001	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PFAM:PF13639	PFscan:PS50089	SEG:seg	SMART:SM00184
SUPFAM:SSF57850	UniParc:UPI0002965F9A	UniProt:M0TTA4	MapMan:35.1	:	:

Description

Putative Whole genome shotgun sequence of line PN40024, scaffold_0.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr8G24510_001]

Coordinates

chr8:+:28693279..28694767

Molecular Weight (calculated)

43898.3 Da

IEP (calculated)

3.966

GRAVY (calculated)

-0.493

Length

396 amino acids

Sequence
(BLAST)

001: MLCVPLEIWK TGPAMANASD LFLVDRVPHR PAPPPIPRPT AASIVSHAFP DPLDFSGFRF FEETSEGIAS SGDYASRLGL GFEKDDDGGH VDREADWAAD
101: DFFVGRRMSS PSASIEFSRA RPVDSDGLRV VGYESDSDSD EQQIVAIGAD LDDGEGRDQA VSDDLGLPLR WDCLRFGENR RDPNEDFEWE EVDGRIEERD
201: AISVTIVGDE ERSEEIRDLD HNEDGGGDVE WEFLLAVNNS GRNPMDPEDV GVYFVDEQEG LGDASDYEAY EVLFGQFVEH DSNFKGSPPA AKSVIESLPS
301: VLLTEEDVAK ANALCAVCKD GILVGERVKQ LPCCHLYHED CILPWLGIRN TCPVCRFELP TDDPEYEKWK ARRAGSVVSD DDDSQLRVDF EVLPEA

Best Arabidopsis Sequence Match ( AT3G02340.2 )
(BLAST)

001: MASTKPDSAI NLEEEAEGDG VAVDDPIFIP ETTNLLVRYS PFDDRDIDCN PYFPFTGPIS DSGSGSYSDS EPDPNSCPID FFDRDSSDVD VAEYLESGGL
101: TAGDYNIWGF YDPKEDEEEE EIVLGTSGSD LQPGDSGEQG LRVTGIDSDS DCEDGVFDFI SEDSSGNRGN DSGRVEVGTG LPPVWDHLFG EGTVLADEEW
201: EEVQNAINWT AFSGPEDEDE EDELSSLSRD DEEEDHELDW QVLLTVNNVV NYIEQAEGIM LNPDDIDPDY YLYLSGLDEF DENHSGHYDA DAILGQMFDD
301: ETGIRGNPPA AKSVIQDLPV VELAVEELDK GNNVCAVCKD EMLVEEKVRR LPCSHFYHGE CIIPWLGIRN TCPVCRYELP TDDLEYERHK SSERGDTGLA
401: RNVLPGRYS

Arabidopsis Description

At3g02340 [Source:UniProtKB/TrEMBL;Acc:Q9FWA5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.