Factsheet for GSMUA_Achr7P15040_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	mitochondrion	84.81	79.53
GSMUA_Achr2P19140_001	Banana	mitochondrion	79.75	69.61
GSMUA_Achr5P07070_001	Banana	nucleus	68.67	65.96
GSMUA_Achr10P...	Banana	mitochondrion	76.9	60.45
GSMUA_Achr6P23590_001	Banana	mitochondrion, nucleus	62.66	57.56
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	63.92	57.55
Os03t0271600-01	Rice	plastid	50.0	56.63
VIT_06s0004g05090.t01	Wine grape	mitochondrion, nucleus	68.67	56.22
KRH23103	Soybean	nucleus	55.7	56.05
EER95109	Sorghum	plastid	48.73	56.0
Zm00001d028590_P001	Maize	plastid	49.05	55.76
KRH10229	Soybean	nucleus	55.38	55.73
TraesCS4D01G209500.1	Wheat	plastid	49.37	55.71
TraesCS4B01G209100.1	Wheat	plastid	49.37	55.71
TraesCS4A01G095800.1	Wheat	cytosol	49.37	55.71
Zm00001d047824_P001	Maize	plastid	48.73	55.4
Solyc06g005650.2.1	Tomato	extracellular	34.18	54.0
KRG97885	Soybean	mitochondrion	58.86	52.1
KRH29763	Soybean	nucleus	59.49	52.08
KRH24759	Soybean	nucleus	58.54	51.25
KRH30994	Soybean	nucleus	62.03	49.87
PGSC0003DMT400016233	Potato	nucleus	61.08	48.98
PGSC0003DMT400005512	Potato	mitochondrion	59.81	48.96
Solyc04g011610.1.1	Tomato	nucleus	60.76	48.61
CDY53450	Canola	cytosol	48.73	47.83
CDX80258	Canola	plastid	52.53	46.76
CDY20473	Canola	nucleus, plastid	49.05	46.41
Bra005020.1-P	Field mustard	nucleus, plastid	48.73	45.16
GSMUA_Achr10P...	Banana	nucleus	40.19	45.04
CDX74839	Canola	cytosol, plastid	45.89	44.75
HORVU4Hr1G060130.1	Barley	cytosol	49.37	44.32
CDY61251	Canola	cytosol	50.0	43.77
Bra000143.1-P	Field mustard	nucleus	51.9	43.73
CDY07641	Canola	nucleus	51.58	43.58
Bra020313.1-P	Field mustard	plastid	53.48	43.44
CDY24951	Canola	nucleus	51.27	43.2
Bra019382.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	50.63	42.9
Bra006709.1-P	Field mustard	plastid	53.16	42.75
CDX88709	Canola	cytosol, plastid	53.16	42.64
CDY48679	Canola	cytosol, plastid	44.94	42.52
Bra002559.1-P	Field mustard	plastid	53.16	42.32
AT3G46620.1	Thale cress	cytosol, plastid	52.22	41.77
AT2G39720.2	Thale cress	nucleus	52.53	41.4
CDX99105	Canola	cytosol, plastid	42.09	41.05
CDY33046	Canola	plastid	44.3	40.94
KRH15082	Soybean	nucleus	49.05	40.58
KRH73053	Soybean	nucleus	48.1	38.87
GSMUA_Achr8P09890_001	Banana	nucleus	26.27	35.93
GSMUA_Achr5P19380_001	Banana	plastid	20.57	34.03
GSMUA_AchrUn_...	Banana	nucleus	27.53	33.72
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus, plastid	26.9	32.82
AT5G59550.2	Thale cress	nucleus, plastid	52.85	32.62
GSMUA_Achr9P05060_001	Banana	nucleus	18.67	31.72
GSMUA_Achr11P...	Banana	nucleus	25.95	30.37
GSMUA_Achr7P13060_001	Banana	mitochondrion	23.42	30.08
GSMUA_Achr6P08590_001	Banana	nucleus	26.9	29.01
GSMUA_Achr2P03780_001	Banana	cytosol	30.06	27.07
GSMUA_Achr11P...	Banana	mitochondrion	25.0	26.42
GSMUA_Achr10P...	Banana	nucleus	25.32	26.4
GSMUA_Achr7P18340_001	Banana	nucleus	24.68	26.0
GSMUA_Achr5P07680_001	Banana	nucleus	24.37	25.84
GSMUA_Achr4P02460_001	Banana	nucleus	20.57	15.7
GSMUA_Achr8P24510_001	Banana	cytosol	18.04	14.39
GSMUA_Achr11P...	Banana	cytosol	23.42	10.21
GSMUA_Achr3P06300_001	Banana	cytosol	16.77	10.15

Protein Annotations

EnsemblPlants:GSMUA_Achr7P15040_001	EnsemblPlants:GSMUA_Achr7T15040_001	EnsemblPlantsGene:GSMUA_Achr7G15040_001	Gene3D:3.30.40.10	InterPro:DUF1117	InterPro:IPR001841
InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR44274	PANTHER:PTHR44274:SF3	PFAM:PF06547
PFAM:PF13639	PFAM:PF14369	PFscan:PS50089	SEG:seg	SMART:SM00184	SUPFAM:SSF57850
UniParc:UPI0002956397	UniProt:M0THP1	MapMan:35.1	:	:	:

Description

Putative E3 ubiquitin-protein ligase RING1 [Source:GMGC_GENE;Acc:GSMUA_Achr7G15040_001]

Coordinates

chr7:+:12064348..12065950

Molecular Weight (calculated)

34678.8 Da

IEP (calculated)

6.502

GRAVY (calculated)

-0.441

Length

316 amino acids

Sequence
(BLAST)

001: MAMASSYWCY RCSRFVRVWP QDAIVCPNCD GGFLEEVGSP PPRLFPAAEP RRRRLRFRRN RRTSAGNRFH FNPVIVLRGP SEGGARDADR ATTTSFELYY
101: DDGTGSGLRP LPESISDFLM GSGFDRLLEQ LAQIEINGIG RGRGCEHPPA SKTAIESMPT VEIVDDHIGR DCHCAICMDA FELGTEAREM PCKHIYHQDC
201: ILPWLSLRNS CPVCRHELPT DVQAQGATGA EGDEQAAATG NEEETVGLTI WRLPGGGFAV GRFSGGRRAG EREFPVVYTE MDGGFNSSGA PRRISWSSTS
301: SRSRGSGGIG TEVVHF

Best Arabidopsis Sequence Match ( AT5G59550.2 )
(BLAST)

001: MDPTNSRHGA SFEFSTRRFT LSTFGQNAPS LYVTTVYNSA IIYPVKHSPR VYLPSNPTPL IPLLRIALKT TFSFSHLQTS LSLLWSAILL SSSSQILSPS
101: KKILKMPSTP TTPTTTTPIT ASYWCYSCTR FVSVWADQGT TTVGSVACPH CDGGFIEQIN DSSSAATELT IPASTEVRSI NNNRRSVIRR RRSGRRPSFN
201: PVIVLQGGAG EREEGEEGDA ARDRRAFEFY YDDGSGSGLR PLPDSVSEIL MGSGFERLLE QLSQIEASAT GIGRSGNPPA SKSAIESLPR VEISDCHIGS
301: EANCAVCTEI FETETEAREM PCKHLFHDDC IVPWLSIRNS CPVCRFELPS EPNRRSNNNE EDNAVGMTIW RLPGGGFAVG RFNAAMRDGE RVLPVVLTEM
401: DGGGIGNSQD GPRRISWVRS HGTLESDSNG TGSGSGSGGR LRRMVRGMVS LMRRVRPNRS SSSSSAAIST SSDNLDLNIE VESRVLDRSN SVMRRYFRRN
501: RSNRDSSSSV LH

Arabidopsis Description

zinc finger (C3HC4-type RING finger) family protein [Source:TAIR;Acc:AT5G59550]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.