Factsheet for GSMUA_Achr5P19380_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P05060_001	Banana	nucleus	30.89	31.72
GSMUA_Achr2P03780_001	Banana	cytosol	50.26	27.35
GSMUA_Achr11P...	Banana	nucleus	35.08	24.81
Zm00001d032646_P001	Maize	cytosol	47.64	24.27
TraesCS1D01G159200.1	Wheat	cytosol, mitochondrion, plastid, vacuole	46.6	24.05
TraesCS1A01G162400.1	Wheat	cytosol, mitochondrion, plastid, vacuole	46.6	24.05
HORVU1Hr1G043220.1	Barley	cytosol, mitochondrion, plastid, vacuole	46.07	23.98
TraesCS1B01G179000.1	Wheat	cytosol, mitochondrion, plastid, vacuole	46.07	23.85
GSMUA_Achr8P09890_001	Banana	nucleus	28.8	23.81
Os10t0487400-01	Rice	mitochondrion, nucleus, plastid, vacuole	46.07	23.78
Zm00001d013971_P001	Maize	cytosol, mitochondrion, plastid, vacuole	47.64	23.64
GSMUA_Achr7P13060_001	Banana	mitochondrion	29.32	22.76
GSMUA_Achr5P07680_001	Banana	nucleus	34.03	21.81
GSMUA_Achr10P...	Banana	nucleus	34.55	21.78
GSMUA_AchrUn_...	Banana	nucleus	29.32	21.71
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus, plastid	29.32	21.62
GSMUA_Achr6P08590_001	Banana	nucleus	32.98	21.5
GSMUA_Achr7P15040_001	Banana	mitochondrion	34.03	20.57
GSMUA_Achr7P18340_001	Banana	nucleus	31.94	20.33
GSMUA_Achr10P...	Banana	nucleus	29.32	19.86
GSMUA_Achr10P...	Banana	mitochondrion	34.03	19.29
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	33.51	18.23
GSMUA_Achr11P...	Banana	mitochondrion	28.27	18.06
GSMUA_Achr5P07070_001	Banana	nucleus	30.37	17.63
GSMUA_Achr2P19140_001	Banana	mitochondrion	32.98	17.4
GSMUA_Achr6P23590_001	Banana	mitochondrion, nucleus	29.84	16.57
GSMUA_Achr10P...	Banana	mitochondrion	32.46	15.42
GSMUA_Achr8P24510_001	Banana	cytosol	26.18	12.63
GSMUA_Achr4P02460_001	Banana	nucleus	26.18	12.08
GSMUA_Achr3P06300_001	Banana	cytosol	25.65	9.39
GSMUA_Achr11P...	Banana	cytosol	29.32	7.72

Protein Annotations

EnsemblPlants:GSMUA_Achr5P19380_001	EnsemblPlants:GSMUA_Achr5T19380_001	EnsemblPlantsGene:GSMUA_Achr5G19380_001	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR44679	PFAM:PF13639	PFscan:PS50089	SEG:seg
SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000294ACD7	UniProt:M0SZW7	MapMan:35.1	:

Description

E3 ubiquitin-protein ligase RING1 [Source:GMGC_GENE;Acc:GSMUA_Achr5G19380_001]

Coordinates

chr5:-:21042681..21048570

Molecular Weight (calculated)

20391.7 Da

IEP (calculated)

5.762

GRAVY (calculated)

-0.436

Length

191 amino acids

Sequence
(BLAST)

001: MSSAGATGSS SAAAAVTAEK RYLCHQCNRT FTAAGTRLAC AHCHGDFLIQ RLSENDPNQY GTPPASKAAV ESLPDVKITE GLLASDEAQC SVCMDLFEMD
101: AVAKQMPCNH VYHKECILPW LELHNSCPVC RYELPTDDPD YERHRTPRSN AVNPGGGLTT GAVAGEVDGN LPVRTSERSS GDHGYPASGT H

Best Arabidopsis Sequence Match ( AT3G19950.2 )
(BLAST)

001: MGFSPKSVII VSELESATYD ITENYFSLSS DGSFLPSSSR FFCFVVSLSR SEKFAESVMS SGVNSTGSAA AAPEVDKMFF CYQCNQTVTI SISSSADPFC
101: PICNQGFLEE YEDPNPNQSL NFNPNSSDSF FPMADPFSTL LPLIFGSSAA APSGMDFMSL FGPSMQPQAR STQQNPQSDA FDPFTFLQNH LQTLRSSGTH
201: FEFVIENHPS DPGNRMPGNF GDYFFGPGLE QLIQQLAEND PNRYGTPPAS KSAIDALPTV KVTKDMLKSE MNQCAVCMDE FEDGSDVKQM PCKHVFHQDC
301: LLPWLELHNS CPVCRFELPT DDPDYENRSQ GSQGSGDGQG SVEGQQTPRF SIQLPWPFRR QDGSGSGSGA PGTGGGNLET RGEDLD

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LQQ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.