Factsheet for GSMUA_Achr10P22580_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
nucleus 2
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P15040_001	Banana	mitochondrion	79.53	84.81
GSMUA_Achr2P19140_001	Banana	mitochondrion	78.93	73.48
GSMUA_Achr5P07070_001	Banana	nucleus	65.58	67.17
GSMUA_Achr10P...	Banana	mitochondrion	72.4	60.7
GSMUA_Achr6P23590_001	Banana	mitochondrion, nucleus	58.75	57.56
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	59.94	57.55
VIT_06s0004g05090.t01	Wine grape	mitochondrion, nucleus	64.09	55.96
Os03t0271600-01	Rice	plastid	46.29	55.91
TraesCS4A01G095800.1	Wheat	cytosol	45.99	55.36
TraesCS4B01G209100.1	Wheat	plastid	45.99	55.36
TraesCS4D01G209500.1	Wheat	plastid	45.99	55.36
EER95109	Sorghum	plastid	45.1	55.27
Zm00001d028590_P001	Maize	plastid	45.4	55.04
Zm00001d047824_P001	Maize	plastid	45.1	54.68
KRG97885	Soybean	mitochondrion	56.97	53.78
KRH10229	Soybean	nucleus	49.55	53.18
KRH23103	Soybean	nucleus	48.96	52.55
Solyc06g005650.2.1	Tomato	extracellular	30.56	51.5
KRH29763	Soybean	nucleus	54.6	50.97
KRH30994	Soybean	nucleus	59.35	50.89
KRH24759	Soybean	nucleus	53.71	50.14
PGSC0003DMT400016233	Potato	nucleus	56.68	48.48
PGSC0003DMT400005512	Potato	mitochondrion	55.19	48.19
Solyc04g011610.1.1	Tomato	nucleus	56.08	47.85
CDY20473	Canola	nucleus, plastid	45.99	46.41
Bra005020.1-P	Field mustard	nucleus, plastid	46.29	45.75
Bra000143.1-P	Field mustard	nucleus	50.45	45.33
CDY07641	Canola	nucleus	50.15	45.19
GSMUA_Achr10P...	Banana	nucleus	37.69	45.04
CDY24951	Canola	nucleus	49.85	44.8
CDX74839	Canola	cytosol, plastid	42.73	44.44
CDY53450	Canola	cytosol	42.43	44.41
HORVU4Hr1G060130.1	Barley	cytosol	45.99	44.03
CDX80258	Canola	plastid	46.29	43.94
CDY61251	Canola	cytosol	46.29	43.21
Bra019382.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	46.88	42.36
AT2G39720.2	Thale cress	nucleus	50.15	42.14
AT3G46620.1	Thale cress	cytosol, plastid	48.96	41.77
Bra020313.1-P	Field mustard	plastid	47.18	40.87
CDX99105	Canola	cytosol, plastid	38.87	40.43
KRH15082	Soybean	nucleus	45.7	40.31
CDX88709	Canola	cytosol, plastid	46.59	39.85
CDY48679	Canola	cytosol, plastid	39.47	39.82
Bra002559.1-P	Field mustard	plastid	46.88	39.8
Bra006709.1-P	Field mustard	plastid	46.29	39.69
KRH73053	Soybean	nucleus	45.4	39.13
CDY33046	Canola	plastid	38.87	38.3
GSMUA_Achr8P09890_001	Banana	nucleus	24.63	35.93
GSMUA_Achr5P19380_001	Banana	plastid	19.29	34.03
GSMUA_AchrUn_...	Banana	nucleus	24.33	31.78
AT5G59550.2	Thale cress	nucleus, plastid	47.77	31.45
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus, plastid	23.74	30.89
GSMUA_Achr9P05060_001	Banana	nucleus	16.91	30.65
GSMUA_Achr7P13060_001	Banana	mitochondrion	21.96	30.08
GSMUA_Achr6P08590_001	Banana	nucleus	25.22	29.01
GSMUA_Achr11P...	Banana	nucleus	22.55	28.15
GSMUA_Achr11P...	Banana	mitochondrion	24.04	27.09
GSMUA_Achr2P03780_001	Banana	cytosol	28.19	27.07
GSMUA_Achr10P...	Banana	nucleus	23.74	26.4
GSMUA_Achr7P18340_001	Banana	nucleus	23.15	26.0
GSMUA_Achr5P07680_001	Banana	nucleus	21.96	24.83
GSMUA_Achr4P02460_001	Banana	nucleus	19.29	15.7
GSMUA_Achr8P24510_001	Banana	cytosol	16.02	13.64
GSMUA_Achr3P06300_001	Banana	cytosol	16.32	10.54
GSMUA_Achr11P...	Banana	cytosol	22.26	10.34

Protein Annotations

EnsemblPlants:GSMUA_Achr10P22580_001	EnsemblPlants:GSMUA_Achr10T22580_001	EnsemblPlantsGene:GSMUA_Achr10G22580_001	Gene3D:3.30.40.10	InterPro:DUF1117	InterPro:IPR001841
InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR44274	PANTHER:PTHR44274:SF3	PFAM:PF06547
PFAM:PF13639	PFAM:PF14369	PFscan:PS50089	SEG:seg	SMART:SM00184	SUPFAM:SSF57850
UniParc:UPI00029531A3	UniProt:M0RKI3	MapMan:35.1	:	:	:

Description

zinc finger, RING-type, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr10G22580_001]

Coordinates

chr10:+:27730055..27731234

Molecular Weight (calculated)

37125.9 Da

IEP (calculated)

6.316

GRAVY (calculated)

-0.517

Length

337 amino acids

Sequence
(BLAST)

001: MATASSYWCY RCSRSVRVWP QDAIVCPDCD GGFLEEISSP PPRLHPAAEP RRRRSSELRF GRNRRSPSGD RSPFNPVIVL RGQPDGGARE ADRATTNSFE
101: LFYDDGTGSG LRPLPESISD FLMGSGFDRL LEQLAQIELN GIGQGRGCEH PPASKASVES MPTIEIVDDH IRKDCHCAIC MDPFELGIEA REMPCKHIYH
201: QDCILPWLSL RNSCPVCRHE MPTDVQGRGV AVAEGEEQAA AARNEEEAVG LTIWRLPGGG FAVGRFSGGR RAGEREFPVV YTEMDGGFNN RGAPRRISWT
301: STGSGRRRES GGIGMKEVHF SEGVRKVEAA IGMEMPM

Best Arabidopsis Sequence Match ( AT3G46620.1 )
(BLAST)

001: MMPNSRSATI TPTTESTTTT TTTTTTLTTS YWCYSCTRFI SVWEDQDANA GVLCPYCNGG FIEEIEDSSN STVAAIPAST PEVRSVEETH RSIIRRRRSN
101: RRTSFNPVIV LHGGGGGGAG ERVENEEGDG ATRERRAYEF YYDDGSGSGL RPLPDSVSEI LMGSGFERLL EQLSQIEASG NGIGRSGNPP ASKSAIESLP
201: RVEISDCHTK AEANCAVCTE VFEAGIEGRE MPCKHIFHGD CIVPWLSIRN SCPVCRFELP SDPIQRSNEE EHAVGMTIWR LPGGGFAVGR FNAGVREGER
301: ILPVVLTEMD GGGLGSNEGP RRISWVRAHE TPEMSRNGGR SGNGGRLRRA VRGMVSFMRR VRPSRGSSNS NVIDLDSDGE TRVMNRSTSL IRRFF

Arabidopsis Description

RDUF1E3 ubiquitin-protein ligase RDUF1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SNB6]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.