Factsheet for PGSC0003DMT400005512

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g005650.2.1	Tomato	extracellular	50.26	97.0
VIT_06s0004g05090.t01	Wine grape	mitochondrion, nucleus	62.18	62.18
KRH10229	Soybean	nucleus	49.74	61.15
GSMUA_Achr7P15040_001	Banana	mitochondrion	48.96	59.81
KRH23103	Soybean	nucleus	48.45	59.55
KRH29763	Soybean	nucleus	53.37	57.06
KRH24759	Soybean	nucleus	53.37	57.06
Os03t0271600-01	Rice	plastid	41.19	56.99
Os05t0110000-01	Rice	mitochondrion	48.19	55.86
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	50.52	55.56
TraesCS4D01G209500.1	Wheat	plastid	40.16	55.36
TraesCS4B01G209100.1	Wheat	plastid	40.16	55.36
TraesCS4A01G095800.1	Wheat	cytosol	40.16	55.36
EER95109	Sorghum	plastid	39.38	55.27
GSMUA_Achr10P...	Banana	mitochondrion	48.19	55.19
PGSC0003DMT400016233	Potato	nucleus	56.22	55.08
Zm00001d028590_P001	Maize	plastid	39.38	54.68
Zm00001d047824_P001	Maize	plastid	39.38	54.68
GSMUA_Achr5P07070_001	Banana	nucleus	46.11	54.1
GSMUA_Achr6P23590_001	Banana	mitochondrion, nucleus	47.41	53.2
GSMUA_Achr2P19140_001	Banana	mitochondrion	48.7	51.93
Zm00001d035677_P001	Maize	plastid	46.37	51.44
TraesCS3D01G532300.1	Wheat	cytosol	51.04	51.04
TraesCS1A01G029800.1	Wheat	cytosol	51.55	49.87
TraesCS1B01G036900.1	Wheat	cytosol	51.55	49.87
TraesCS3B01G595200.1	Wheat	cytosol	51.55	49.87
HORVU1Hr1G004330.14	Barley	cytosol	51.3	49.38
GSMUA_Achr10P...	Banana	mitochondrion	51.3	49.25
TraesCS1D01G030300.1	Wheat	nucleus	51.04	49.01
Zm00001d011076_P001	Maize	plastid	47.67	47.55
CDY53450	Canola	cytosol	38.6	46.27
EES17560	Sorghum	plastid	49.22	46.0
CDY61251	Canola	cytosol	43.01	45.98
CDX80258	Canola	plastid	42.23	45.92
Os01t0972000-01	Rice	nucleus	39.64	45.81
HORVU7Hr1G055010.1	Barley	cytosol	25.91	45.25
Bra020313.1-P	Field mustard	plastid	45.34	44.99
Bra019382.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	42.75	44.24
CDX99105	Canola	cytosol, plastid	37.05	44.14
HORVU4Hr1G060130.1	Barley	cytosol	40.16	44.03
Bra006709.1-P	Field mustard	plastid	44.82	44.02
Bra002559.1-P	Field mustard	plastid	45.08	43.83
AT3G46620.1	Thale cress	cytosol, plastid	44.82	43.8
CDY48679	Canola	cytosol, plastid	37.82	43.71
HORVU3Hr1G041030.1	Barley	mitochondrion	43.78	43.67
CDX88709	Canola	cytosol, plastid	44.56	43.65
CDY33046	Canola	plastid	38.08	42.98
HORVU3Hr1G115000.7	Barley	mitochondrion	42.23	41.58
GSMUA_Achr10P...	Banana	nucleus	30.05	41.13
AT5G59550.2	Thale cress	nucleus, plastid	46.11	34.77
PGSC0003DMT400082489	Potato	nucleus	22.8	27.33
PGSC0003DMT400058464	Potato	nucleus	22.02	26.73
PGSC0003DMT400079301	Potato	nucleus	19.95	25.67
PGSC0003DMT400046527	Potato	nucleus	23.06	24.72
PGSC0003DMT400026380	Potato	nucleus	23.83	23.77
PGSC0003DMT400002370	Potato	cytosol	19.69	23.53
PGSC0003DMT400061055	Potato	extracellular	17.1	22.15
PGSC0003DMT400081469	Potato	nucleus	20.98	21.43
PGSC0003DMT400069320	Potato	nucleus	20.98	20.15
PGSC0003DMT400068309	Potato	cytosol	14.25	13.82
PGSC0003DMT400003515	Potato	nucleus	13.21	13.75
PGSC0003DMT400071362	Potato	nucleus	16.84	13.74
PGSC0003DMT400063293	Potato	nucleus	14.77	13.19

Protein Annotations

EntrezGene:102587426	Gene3D:3.30.40.10	MapMan:35.1	InterPro:DUF1117	InterPro:IPR001841	InterPro:IPR013083
UniProt:M0ZQ04	PFAM:PF06547	PFAM:PF13639	PFAM:PF14369	EnsemblPlantsGene:PGSC0003DMG400002153	PGSC:PGSC0003DMG400002153
EnsemblPlants:PGSC0003DMT400005512	PFscan:PS50089	PANTHER:PTHR44274	PANTHER:PTHR44274:SF3	SMART:SM00184	SUPFAM:SSF57850
UniParc:UPI000296EC50	RefSeq:XP_006358699.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

Zinc finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400002153]

Coordinates

chr6:+:4472330..4474082

Molecular Weight (calculated)

43169.3 Da

IEP (calculated)

8.490

GRAVY (calculated)

-0.656

Length

386 amino acids

Sequence
(BLAST)

001: MSSYWCYRCT RFVRISVGND VVCPHCDSGF IEVAEANIGS PESRRRFPMW NERPESDRSV NMGSRRSRRN RGDRSPFNPV IVLRSPSEAP GEDEAAAAAE
101: ERSYELYYDD GEGSGLRPLP PTMSEFLMGS GFDRLLDQLA QIEVNGFSRP ENPPASKSAI ESMPIIQIAC THVNSETHCA VCKEAFDLGS EAREMPCKHI
201: YHSDCILPWL SLRNSCPVCR HELPAESTET TNSDNIARPR NEEEAMGLTI WRLPGGGFAV GRFSGGRRGA ERELPVVYTE MDGGFNNGVP RRIAWRSRRS
301: NTGRNGSGIS RIFNNFTSFF RRLTPSSQRR SLSIHSSSSE SSGSGSGSAV FRSRSVSSSS SSIFSRYLRR SRRNWVPEEH NGVTRW

Best Arabidopsis Sequence Match ( AT2G39720.2 )
(BLAST)

001: MASGSYWCYS CSRFVWVSDS ISCPDCDGGF LELIQEPLDF TPSDSFTTTT TTQHRSPTRF PPPSSSSSTP SASMHADNSP TPTIVTRTRS NRSPNPVIVL
101: RGSAAAPSSD VVSEGLDRSA FQMYYDDGTD SGLRPLPPSM TEFLLGSGFD RLLDQISQIE LNTNRNLRSC EHPPASKSAI EALPLIEIDP THLLSDSQSH
201: CAVCKENFVL KSSAREMPCN HIYHPDCILP WLAIRNSCPV CRHELPAEDL TDGTGAALTA VTATAEEEED SAAGLTIWRL PGGGFAVGRI PGGWRGGDRM
301: MPVVYTEVDG GRLGDERLPR RVAWGSRRGG RDGGGSRERG GGFAGRIMRL FGCFSGSSGS IAAAAAASSG SGSRIRVTRR TRSFSMFSTA SSSSRRRNWL
401: A

Arabidopsis Description

RHC2AProbable E3 ubiquitin-protein ligase RHC2A [Source:UniProtKB/Swiss-Prot;Acc:O22283]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.