Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 1
- plastid 1
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g009170.1.1 | Tomato | nucleus | 87.89 | 91.59 |
| CDY36069 | Canola | cytosol | 36.02 | 53.46 |
| CDX82271 | Canola | cytosol | 35.09 | 53.05 |
| Bra001767.1-P | Field mustard | nucleus | 35.09 | 52.8 |
| CDY72364 | Canola | cytosol | 35.09 | 50.9 |
| KRG90622 | Soybean | nucleus | 42.24 | 45.64 |
| Bra038246.1-P | Field mustard | nucleus | 45.96 | 45.54 |
| CDY33437 | Canola | cytosol | 45.65 | 45.37 |
| CDY24592 | Canola | nucleus | 44.72 | 44.86 |
| KRH36132 | Soybean | nucleus | 39.75 | 44.76 |
| CDY25360 | Canola | cytosol, nucleus, plastid | 43.79 | 43.65 |
| Bra035835.1-P | Field mustard | nucleus | 44.1 | 43.43 |
| Zm00001d045625_P001 | Maize | cytosol | 38.51 | 40.0 |
| AT3G19950.2 | Thale cress | cytosol | 47.52 | 39.64 |
| CDY22790 | Canola | nucleus | 32.3 | 38.52 |
| EER89027 | Sorghum | nucleus | 37.27 | 37.38 |
| Os06t0101300-01 | Rice | nucleus | 38.82 | 36.98 |
| TraesCS7D01G000400.1 | Wheat | cytosol | 36.34 | 35.45 |
| PGSC0003DMT400026380 | Potato | nucleus | 42.24 | 35.14 |
| TraesCS4A01G499200.1 | Wheat | cytosol, mitochondrion | 36.34 | 34.93 |
| CDY42507 | Canola | cytosol | 36.34 | 34.51 |
| HORVU7Hr1G000850.1 | Barley | cytosol, mitochondrion, nucleus | 35.71 | 32.21 |
| PGSC0003DMT400069320 | Potato | nucleus | 36.02 | 28.86 |
| PGSC0003DMT400058464 | Potato | nucleus | 27.95 | 28.3 |
| PGSC0003DMT400046527 | Potato | nucleus | 31.37 | 28.06 |
| PGSC0003DMT400079301 | Potato | nucleus | 23.6 | 25.33 |
| PGSC0003DMT400061055 | Potato | extracellular | 21.12 | 22.82 |
| PGSC0003DMT400005512 | Potato | mitochondrion | 27.33 | 22.8 |
| PGSC0003DMT400016233 | Potato | nucleus | 27.02 | 22.08 |
| PGSC0003DMT400081469 | Potato | nucleus | 25.47 | 21.69 |
| PGSC0003DMT400002370 | Potato | cytosol | 21.74 | 21.67 |
| PGSC0003DMT400063293 | Potato | nucleus | 20.5 | 15.28 |
| PGSC0003DMT400071362 | Potato | nucleus | 20.19 | 13.74 |
| PGSC0003DMT400003515 | Potato | nucleus | 14.91 | 12.94 |
| PGSC0003DMT400068309 | Potato | cytosol | 15.53 | 12.56 |
Protein Annotations
| EntrezGene:102592279 | Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:IPR001841 | InterPro:IPR013083 | UniProt:M1D621 |
| PFAM:PF13923 | PFAM:PF14369 | EnsemblPlantsGene:PGSC0003DMG400032567 | PGSC:PGSC0003DMG400032567 | EnsemblPlants:PGSC0003DMT400082489 | PFscan:PS50089 |
| PANTHER:PTHR44679 | PANTHER:PTHR44679:SF3 | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI000295851B | RefSeq:XP_006359295.1 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : |
Description
E3 ubiquitin-protein ligase RING1 [Source:PGSC_GENE;Acc:PGSC0003DMG400032567]
Coordinates
chr4:+:4782055..4786934
Molecular Weight (calculated)
34642.7 Da
IEP (calculated)
4.367
GRAVY (calculated)
-0.574
Length
322 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSAGITVAD GGAALYFCHK CSNTVTITPS ATGDLFCPTC NSDFIEEYEE PDPEPEMFPN FPNSVLLSSL LMGSRSRSDP TTGSPPHSAP TTGSRVSPYT
101: AIFNSNRNPR QTSSGSDDFN PFEFLQTHLA GLRANGASFE FVIEGGNGGS GFQLPANFGD YFIGPGFEQL IQNLAENDPN RYGTPPASRS AVEGLPTIKV
201: DEELMRSELA QCAVCKDDFE MGLDVKQMPC KHVYHKDCIV PWLELHSSCP VCRYELPTDD PENENRQRDT DGDSSGGGSA SGSGESGRRF TTISLPWPLG
301: SFGSSSSQGG SESRGQRNRE SN
101: AIFNSNRNPR QTSSGSDDFN PFEFLQTHLA GLRANGASFE FVIEGGNGGS GFQLPANFGD YFIGPGFEQL IQNLAENDPN RYGTPPASRS AVEGLPTIKV
201: DEELMRSELA QCAVCKDDFE MGLDVKQMPC KHVYHKDCIV PWLELHSSCP VCRYELPTDD PENENRQRDT DGDSSGGGSA SGSGESGRRF TTISLPWPLG
301: SFGSSSSQGG SESRGQRNRE SN
001: MGFSPKSVII VSELESATYD ITENYFSLSS DGSFLPSSSR FFCFVVSLSR SEKFAESVMS SGVNSTGSAA AAPEVDKMFF CYQCNQTVTI SISSSADPFC
101: PICNQGFLEE YEDPNPNQSL NFNPNSSDSF FPMADPFSTL LPLIFGSSAA APSGMDFMSL FGPSMQPQAR STQQNPQSDA FDPFTFLQNH LQTLRSSGTH
201: FEFVIENHPS DPGNRMPGNF GDYFFGPGLE QLIQQLAEND PNRYGTPPAS KSAIDALPTV KVTKDMLKSE MNQCAVCMDE FEDGSDVKQM PCKHVFHQDC
301: LLPWLELHNS CPVCRFELPT DDPDYENRSQ GSQGSGDGQG SVEGQQTPRF SIQLPWPFRR QDGSGSGSGA PGTGGGNLET RGEDLD
101: PICNQGFLEE YEDPNPNQSL NFNPNSSDSF FPMADPFSTL LPLIFGSSAA APSGMDFMSL FGPSMQPQAR STQQNPQSDA FDPFTFLQNH LQTLRSSGTH
201: FEFVIENHPS DPGNRMPGNF GDYFFGPGLE QLIQQLAEND PNRYGTPPAS KSAIDALPTV KVTKDMLKSE MNQCAVCMDE FEDGSDVKQM PCKHVFHQDC
301: LLPWLELHNS CPVCRFELPT DDPDYENRSQ GSQGSGDGQG SVEGQQTPRF SIQLPWPFRR QDGSGSGSGA PGTGGGNLET RGEDLD
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LQQ9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.