Factsheet for Bra038246.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72364	Canola	cytosol	68.31	100.0
CDY33437	Canola	cytosol	94.77	95.06
Bra001767.1-P	Field mustard	nucleus	54.77	83.18
Bra035835.1-P	Field mustard	nucleus	77.54	77.06
AT3G19950.2	Thale cress	cytosol	77.23	65.03
KRH36132	Soybean	nucleus	40.92	46.5
PGSC0003DMT400082489	Potato	nucleus	45.54	45.96
KRG90622	Soybean	nucleus	41.85	45.64
Solyc04g009170.1.1	Tomato	nucleus	43.38	45.63
Zm00001d045625_P001	Maize	cytosol	43.38	45.48
VIT_17s0053g00320.t01	Wine grape	plastid	50.46	44.44
EER89027	Sorghum	nucleus	43.08	43.61
Os06t0101300-01	Rice	nucleus	42.77	41.12
TraesCS7D01G000400.1	Wheat	cytosol	40.0	39.39
TraesCS4A01G499200.1	Wheat	cytosol, mitochondrion	40.31	39.1
HORVU7Hr1G000850.1	Barley	cytosol, mitochondrion, nucleus	39.38	35.85
Bra000207.1-P	Field mustard	mitochondrion, nucleus	30.15	30.91
Bra004589.1-P	Field mustard	nucleus	22.77	30.33
Bra014684.1-P	Field mustard	nucleus	17.54	29.69
Bra007253.1-P	Field mustard	mitochondrion, nucleus	27.69	29.03
Bra037109.1-P	Field mustard	nucleus	28.0	27.25
Bra030854.1-P	Field mustard	nucleus	25.85	26.92
Bra037999.1-P	Field mustard	nucleus	24.0	26.9
Bra027436.1-P	Field mustard	nucleus	25.54	26.86
Bra002823.1-P	Field mustard	nucleus	27.69	25.57
Bra028173.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	24.62	24.62
Bra019109.1-P	Field mustard	nucleus	24.31	24.53
Bra030136.1-P	Field mustard	cytosol	18.15	24.38
Bra005020.1-P	Field mustard	nucleus, plastid	25.54	24.34
Bra011215.1-P	Field mustard	cytosol	17.23	24.14
Bra000143.1-P	Field mustard	nucleus	27.69	24.0
Bra006709.1-P	Field mustard	plastid	28.31	23.41
Bra026444.1-P	Field mustard	nucleus	26.46	23.18
Bra019382.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	26.15	22.79
Bra002559.1-P	Field mustard	plastid	27.69	22.67
Bra037800.1-P	Field mustard	cytosol	20.92	22.52
Bra020313.1-P	Field mustard	plastid	26.46	22.11
Bra005970.1-P	Field mustard	cytosol	15.38	17.24
Bra014266.1-P	Field mustard	nucleus	23.38	17.23
Bra028935.1-P	Field mustard	nucleus	28.62	16.37
Bra008671.1-P	Field mustard	nucleus	13.23	14.98
Bra021467.1-P	Field mustard	nucleus	16.62	13.85
Bra009323.1-P	Field mustard	cytosol	15.69	13.46
Bra023539.1-P	Field mustard	cytoskeleton, cytosol, nucleus	16.0	13.1
Bra013006.1-P	Field mustard	nucleus	16.62	12.95

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	EnsemblPlantsGene:Bra038246	EnsemblPlants:Bra038246.1	EnsemblPlants:Bra038246.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0008270	GO:GO:0046872	InterPro:IPR001841	InterPro:IPR011016	InterPro:IPR013083
UniProt:M4FAY0	PFAM:PF13639	PFAM:PF14369	PFscan:PS50089	PANTHER:PTHR44679	PANTHER:PTHR44679:SF1
SMART:SM00184	SMART:SM00744	SUPFAM:SSF57850	UniParc:UPI0002544AC2	InterPro:Znf_RING	InterPro:Znf_RING-CH
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

AT3G19950 (E=6e-101) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA01:-:21328646..21329623

Molecular Weight (calculated)

34866.5 Da

IEP (calculated)

4.335

GRAVY (calculated)

-0.524

Length

325 amino acids

Sequence
(BLAST)

001: MSSGGNSTLS PAAAVDKLFF CYQCNRTVTI SISSADDPFC PRCSGGFLEE YEEPNPNPSP NLNPLGFLPM ADPFSTILPL LFGSSSAPPS SNPSLFGPRS
101: TENQPQGGGA FDPVSFLQNH LQHLQSSGTH VQFVIEDHPS DPFSRIPGNM GDYFFGPGLE QLIQQLAEND PNRYGTPPAS KSAIDALPTV KVTLDMLNSE
201: MNQCAVCMDE FEDGGDVKQM PCKHVFHQDC LMPWLELHNS CPVCRYELPT DDPDYESRGQ RGGQMMSGGG QGSVEGQQTA RRFSIQLPLR FRTQDGSGSG
301: RGSGSGSGAG GGGGSNLETR QEDLD

Best Arabidopsis Sequence Match ( AT3G19950.2 )
(BLAST)

001: MGFSPKSVII VSELESATYD ITENYFSLSS DGSFLPSSSR FFCFVVSLSR SEKFAESVMS SGVNSTGSAA AAPEVDKMFF CYQCNQTVTI SISSSADPFC
101: PICNQGFLEE YEDPNPNQSL NFNPNSSDSF FPMADPFSTL LPLIFGSSAA APSGMDFMSL FGPSMQPQAR STQQNPQSDA FDPFTFLQNH LQTLRSSGTH
201: FEFVIENHPS DPGNRMPGNF GDYFFGPGLE QLIQQLAEND PNRYGTPPAS KSAIDALPTV KVTKDMLKSE MNQCAVCMDE FEDGSDVKQM PCKHVFHQDC
301: LLPWLELHNS CPVCRFELPT DDPDYENRSQ GSQGSGDGQG SVEGQQTPRF SIQLPWPFRR QDGSGSGSGA PGTGGGNLET RGEDLD

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LQQ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.