Factsheet for Bra037800.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
mitochondrion 1
peroxisome 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra005541.1-P
Bra012818.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G64920.1	Bra005541.1-P	AT2G32950.1	10488108
AT5G64920.1	Bra005541.1-P	AT2G32950.1	12028569
AT5G64920.1	Bra005541.1-P	AT2G32950.1	12827204
AT5G64920.1	Bra012818.1-P	AT3G52155.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY18690	Canola	cytosol, peroxisome, plastid	98.34	99.33
AT5G64920.1	Thale cress	cytosol	80.79	73.05
KRG90607	Soybean	nucleus	51.66	46.29
KRH36150	Soybean	nucleus	50.33	45.65
Bra030136.1-P	Field mustard	cytosol	34.44	42.98
VIT_18s0001g14530.t01	Wine grape	cytosol, nucleus, plastid	46.03	41.62
PGSC0003DMT400081469	Potato	nucleus	50.99	40.74
Solyc09g074460.1.1	Tomato	nucleus	50.66	40.58
Bra001767.1-P	Field mustard	nucleus	18.21	25.7
Bra027436.1-P	Field mustard	nucleus	24.83	24.27
Bra030854.1-P	Field mustard	nucleus	22.85	22.12
Bra037999.1-P	Field mustard	nucleus	21.19	22.07
Bra014684.1-P	Field mustard	nucleus	13.91	21.88
Bra035835.1-P	Field mustard	nucleus	23.51	21.71
Bra038246.1-P	Field mustard	nucleus	22.52	20.92
Bra011215.1-P	Field mustard	cytosol	15.89	20.69
Bra037109.1-P	Field mustard	nucleus	22.85	20.66
Bra000207.1-P	Field mustard	mitochondrion, nucleus	21.19	20.19
Bra019382.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	24.17	19.57
Bra005020.1-P	Field mustard	nucleus, plastid	21.52	19.06
Bra002823.1-P	Field mustard	nucleus	22.19	19.03
Bra004589.1-P	Field mustard	nucleus	15.23	18.85
Bra007253.1-P	Field mustard	mitochondrion, nucleus	18.87	18.39
Bra005970.1-P	Field mustard	cytosol	17.55	18.28
Bra026444.1-P	Field mustard	nucleus	22.19	18.06
Bra000143.1-P	Field mustard	nucleus	22.19	17.87
Bra019109.1-P	Field mustard	nucleus	18.87	17.7
Bra006709.1-P	Field mustard	plastid	22.85	17.56
Bra028173.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	18.87	17.54
Bra002559.1-P	Field mustard	plastid	22.85	17.38
Bra020313.1-P	Field mustard	plastid	21.85	16.97
Bra021467.1-P	Field mustard	nucleus	21.52	16.67
Bra008671.1-P	Field mustard	nucleus	14.57	15.33
Bra009323.1-P	Field mustard	cytosol	19.21	15.3
Bra014266.1-P	Field mustard	nucleus	21.52	14.74
Bra013006.1-P	Field mustard	nucleus	20.2	14.63
Bra023539.1-P	Field mustard	cytoskeleton, cytosol, nucleus	17.22	13.1
Bra028935.1-P	Field mustard	nucleus	23.84	12.68

Protein Annotations

EnsemblPlants:Bra037800.1	EnsemblPlants:Bra037800.1-P	EnsemblPlantsGene:Bra037800	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR44679	PFAM:PF13639	PFAM:PF14369
PFscan:PS50089	SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0002541B34	UniProt:M4F9N7
MapMan:35.1	:	:	:	:	:

Description

AT5G64920 (E=5e-056) CIP8 | CIP8 (COP1-INTERACTING PROTEIN 8); protein binding / zinc ion binding

Coordinates

chrA09:-:3641148..3642056

Molecular Weight (calculated)

33038.2 Da

IEP (calculated)

4.187

GRAVY (calculated)

-0.523

Length

302 amino acids

Sequence
(BLAST)

001: MSSAPSDDAH WCYHCNKRVV VETLDDFVVC SECNKGFVES IHPIPRSPPL SPDLRVEDSS IGSHFLQMLR LLTHAPSPPR LDVLSYEDEF FGLEINSRNE
101: EDEDDEEEEE EEEEGEDRGG EMFPITTRSI TGRNRILDWA EILMGIEDNS DRYAVNAADY VDDGAGYEAL LQNLAEGDGG GGGGGGGRRG APPAAKSAIE
201: ALETFEVCSD DKMMVVVCAV CKDGMVIGET VKKLPCGHCY HGNCILPWLG TRNSCPVCRF QLKTDDAEYE EEEARKKRTT TTTTTALTDS GASSSSSASS
301: RF

Best Arabidopsis Sequence Match ( AT5G64920.1 )
(BLAST)

001: MSDAPSSSPD ATASHWCYHC NKRVVVETLD DFVVCCECNK GFVESIQPTP AAYSSPAPPQ PLSPDLNVED SSIGSHFLQM LRLLAHAPSQ RSPPRHLDVL
101: SYEDDFFRLE LNSRNEIDDD EDEDEDDGDE EEEDEEENLT VNDEEDEEDD LRRRNRFPLT TTQSRTGRNR ILDWAEILMG IEDNSIEFRM ESDRYAGNPA
201: DYIDDAAGYE ALLQNLAEGD GGGGGGRRGA PPAAKSAIEA LETFEVSSSE GEMVMVCAVC KDGMVMGETG KKLPCGHCYH GDCIVPWLGT RNSCPVCRFQ
301: LETDDAEYEE ERKKRTSTVS DSAAASSSSS TSRY

Arabidopsis Description

CIP8CIP8 [Source:UniProtKB/TrEMBL;Acc:A0A178UJC6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.