Factsheet for Bra014266.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY58938	Canola	nucleus	98.87	98.87
AT5G01980.1	Thale cress	nucleus	75.51	67.55
KRH00522	Soybean	plastid	47.17	37.21
KRH40635	Soybean	nucleus, plastid	46.03	36.84
PGSC0003DMT400071362	Potato	nucleus	38.32	35.73
VIT_08s0056g00320.t01	Wine grape	mitochondrion	47.62	35.59
GSMUA_Achr4P02460_001	Banana	nucleus	30.39	32.37
TraesCS5D01G146400.1	Wheat	nucleus	34.92	30.32
TraesCS5A01G145800.1	Wheat	nucleus	34.69	30.0
Bra001767.1-P	Field mustard	nucleus	14.51	29.91
TraesCS5B01G144700.1	Wheat	nucleus	34.24	29.61
Os11t0119200-01	Rice	nucleus	32.43	29.12
Os12t0118700-01	Rice	nucleus	31.97	28.26
Bra004589.1-P	Field mustard	nucleus	14.51	26.23
Bra014684.1-P	Field mustard	nucleus	11.11	25.52
Bra030136.1-P	Field mustard	cytosol	13.15	23.97
Bra038246.1-P	Field mustard	nucleus	17.23	23.38
Bra000207.1-P	Field mustard	mitochondrion, nucleus	16.78	23.34
Bra035835.1-P	Field mustard	nucleus	17.23	23.24
Bra007253.1-P	Field mustard	mitochondrion, nucleus	15.65	22.26
Bra037800.1-P	Field mustard	cytosol	14.74	21.52
GSMUA_Achr11P...	Banana	cytosol	35.37	21.52
Bra005020.1-P	Field mustard	nucleus, plastid	16.55	21.41
Bra037999.1-P	Field mustard	nucleus	13.83	21.03
Bra002823.1-P	Field mustard	nucleus	16.78	21.02
Bra006709.1-P	Field mustard	plastid	18.37	20.61
Bra037109.1-P	Field mustard	nucleus	15.42	20.36
Bra019382.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	17.01	20.11
Bra000143.1-P	Field mustard	nucleus	17.01	20.0
Bra019109.1-P	Field mustard	nucleus	14.51	19.88
Bra030854.1-P	Field mustard	nucleus	14.06	19.87
Bra020313.1-P	Field mustard	plastid	17.46	19.79
Bra002559.1-P	Field mustard	plastid	17.46	19.4
Bra005970.1-P	Field mustard	cytosol	12.47	18.97
Bra026444.1-P	Field mustard	nucleus	15.65	18.6
Bra011215.1-P	Field mustard	cytosol	9.75	18.53
Bra028173.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	13.61	18.46
Bra027436.1-P	Field mustard	nucleus	12.93	18.45
Bra009323.1-P	Field mustard	cytosol	13.83	16.09
Bra021467.1-P	Field mustard	nucleus	14.06	15.9
Bra008671.1-P	Field mustard	nucleus	9.75	14.98
Bra013006.1-P	Field mustard	nucleus	13.38	14.15
Bra023539.1-P	Field mustard	cytoskeleton, cytosol, nucleus	12.7	14.11
Bra028935.1-P	Field mustard	nucleus	16.33	12.68

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	EnsemblPlantsGene:Bra014266	EnsemblPlants:Bra014266.1	EnsemblPlants:Bra014266.1-P	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	InterPro:IPR001841	InterPro:IPR013083	UniProt:M4DCQ0	PFAM:PF13639
PFscan:PS50089	PANTHER:PTHR44679	SMART:SM00184	SUPFAM:SSF57850	TMHMM:TMhelix	UniParc:UPI0002545FA7
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

AT5G01980 (E=4e-097) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA08:+:2093612..2094937

Molecular Weight (calculated)

49768.3 Da

IEP (calculated)

4.753

GRAVY (calculated)

-0.733

Length

441 amino acids

Sequence
(BLAST)

001: MDSRDDVTNP TPSPSCNLCG RLIPRSTTTA PDDLEIFSLC GDCKFLLLQD FGTTPPPPPL TRRQTSRRRR LRMRRRRSSS SRQGSSSESV ADQPQQFTHL
101: ISIARQSETS SHTTPNGSAR WRVLSESESE DLDNLSNASF SLYRFSSLGG ESDAASTDIE FDTDIDPMHA GLNQWNSDDE DREWEEEEGA RHSRTPSESN
201: SSVTRFDSLD LERTFRQRII ERRQALSRNI FTGLEDLEFS RYPGNVADYL DERGFEELLE QLADSDNSRR GAPPASLSCV RSLPRVIIRE EGLDCAVCKE
301: VFSLGNETTQ LPCLHLYHPH CIVPWLGARN SCPLCRYELP TDDKDYEDRK QNVVDVVSED SSSDDDGTEG GEEEDHDVVR GEGEAGVRSV SRGRWLFLAA
401: APVVSLVGVV LAMWLSNPQR RNIVFSHSQR GNRSRRWLPF F

Best Arabidopsis Sequence Match ( AT5G01980.1 )
(BLAST)

001: MESQGPSNGH PMDISSNSIP SSACNLCGRV VQSASDDLEI FSLCVDCKFL LLEDFGTPAP PLARRQTIRR RRMRRRRRTT RHDSSESVGV GDLSSQQFTH
101: LISIARQSLS TVQASEDLRD DLRTSSHTTP SGSTRWRLFS ESESDDFDNF GETESNASFS LYRFPHADND TISFSAYGGE SDASTDRHAD IFVQPDDRSD
201: IDFDTDIDPM RAGLNQWNSD EEDREWEEGA GPSGVAGTRY RNYLASPSES YSSMTRFDSP ELERSFRQRI IERRHSLSRN IFTGLEDLDF SPYAANVGDY
301: LDERGFDELL EQLAESDNSR RGAPPASVSC VRNLPRVIIA EEHVMKGLVC AICKELFSLR NETTQLPCLH LYHAHCIVPW LSARNSCPLC RYELPTDDKD
401: YEEGKRNVLD VSEDSSSSDD GTESGEEEYV ERGESESGVS RVSRGRWLFL AAAPVVSLVG VVLAMWLSSP HRRGIAISHS QRENRTRRWL PFF

Arabidopsis Description

At5g01980 [Source:UniProtKB/TrEMBL;Acc:Q9LZN3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.