Factsheet for Bra008671.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69496	Canola	cytosol	98.26	97.92
Os06t0633500-01	Rice	cytosol, nucleus	12.2	28.23
AT5G15820.1	Thale cress	cytosol	33.1	27.3
Bra023539.1-P	Field mustard	cytoskeleton, cytosol, nucleus	35.19	25.44
Bra021467.1-P	Field mustard	nucleus	29.27	21.54
KRH18313	Soybean	nucleus	27.87	21.39
KRG93748	Soybean	nucleus, plastid	27.53	20.79
Bra005970.1-P	Field mustard	cytosol	20.56	20.34
Bra013006.1-P	Field mustard	nucleus	28.57	19.66
Solyc02g089410.2.1	Tomato	nucleus	21.6	18.96
Bra001767.1-P	Field mustard	nucleus	13.59	18.22
VIT_14s0083g00710.t01	Wine grape	nucleus	24.74	18.16
Solyc02g065650.1.1	Tomato	cytosol, nucleus, plastid	25.09	18.14
PGSC0003DMT400003515	Potato	nucleus	23.34	18.06
Bra014684.1-P	Field mustard	nucleus	11.85	17.71
PGSC0003DMT400068309	Potato	cytosol	23.69	17.09
TraesCS7D01G246300.1	Wheat	plastid	15.68	16.73
Bra009323.1-P	Field mustard	cytosol	21.95	16.62
Bra030136.1-P	Field mustard	cytosol	13.94	16.53
TraesCS7B01G144100.1	Wheat	plastid	15.33	16.36
Os08t0487500-01	Rice	plastid	15.33	16.24
Os02t0727700-01	Rice	cytosol, nucleus, plastid	17.42	16.08
TraesCS7A01G247700.1	Wheat	cytosol, plastid	14.98	15.99
TraesCS6A01G288800.1	Wheat	cytosol, plastid	17.07	15.96
GSMUA_Achr8P24510_001	Banana	cytosol	21.95	15.91
TraesCS6B01G318600.1	Wheat	cytosol, plastid	16.72	15.64
TraesCS6D01G160300.1	Wheat	nucleus	18.82	15.52
OQU85475	Sorghum	cytosol	17.07	15.31
Zm00001d053704_P001	Maize	cytosol	18.47	14.89
HORVU6Hr1G034800.1	Barley	cytosol, nucleus	19.16	14.86
Bra037800.1-P	Field mustard	cytosol	15.33	14.57
Zm00001d051736_P001	Maize	cytosol	16.72	14.55
Zm00001d031273_P001	Maize	cytosol, plastid	14.63	14.53
Zm00001d046663_P001	Maize	cytosol	14.98	14.43
Bra004589.1-P	Field mustard	nucleus	12.2	14.34
EES14331	Sorghum	plastid	14.29	13.99
OQU84547	Sorghum	cytoskeleton, cytosol, nucleus	18.82	13.95
Bra027436.1-P	Field mustard	nucleus	14.98	13.92
TraesCS7D01G387300.1	Wheat	cytosol	15.68	13.8
HORVU6Hr1G072430.1	Barley	cytosol	17.42	13.74
EER90075	Sorghum	nucleus	14.29	13.53
TraesCS6B01G198800.1	Wheat	nucleus	18.82	13.47
TraesCS7B01G293600.1	Wheat	cytosol	15.33	13.33
TraesCS7A01G391700.1	Wheat	cytosol	15.33	13.29
Bra038246.1-P	Field mustard	nucleus	14.98	13.23
Bra007253.1-P	Field mustard	mitochondrion, nucleus	14.29	13.23
Bra030854.1-P	Field mustard	nucleus	14.29	13.14
GSMUA_Achr3P06300_001	Banana	cytosol	23.34	12.84
Bra028173.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	14.29	12.62
Bra002823.1-P	Field mustard	nucleus	15.33	12.5
Bra037999.1-P	Field mustard	nucleus	12.54	12.41
Bra000207.1-P	Field mustard	mitochondrion, nucleus	13.59	12.3
Bra035835.1-P	Field mustard	nucleus	13.94	12.23
Bra019109.1-P	Field mustard	nucleus	13.24	11.8
HORVU7Hr1G092570.1	Barley	cytosol	15.68	11.75
Bra037109.1-P	Field mustard	nucleus	13.59	11.68
Bra011215.1-P	Field mustard	cytosol	9.41	11.64
Bra019382.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	14.63	11.26
Bra005020.1-P	Field mustard	nucleus, plastid	12.89	10.85
Bra026444.1-P	Field mustard	nucleus	13.94	10.78
Bra006709.1-P	Field mustard	plastid	14.63	10.69
Os02t0191500-01	Rice	nucleus	13.94	10.67
Bra000143.1-P	Field mustard	nucleus	13.59	10.4
Bra020313.1-P	Field mustard	plastid	13.59	10.03
Bra002559.1-P	Field mustard	plastid	13.59	9.82
Bra014266.1-P	Field mustard	nucleus	14.98	9.75
Bra028935.1-P	Field mustard	nucleus	14.63	7.39

Protein Annotations

EnsemblPlants:Bra008671.1	EnsemblPlants:Bra008671.1-P	EnsemblPlantsGene:Bra008671	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR44679	PFAM:PF13639	PFscan:PS50089
SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0002544C3D	UniProt:M4CWS4	MapMan:35.1

Description

AT5G15820 (E=6e-028) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA10:-:13326371..13327234

Molecular Weight (calculated)

31720.4 Da

IEP (calculated)

3.743

GRAVY (calculated)

-0.487

Length

287 amino acids

Sequence
(BLAST)

001: MAKLFGFPIN VEEDGGRGGG SSTNSRSAAQ PDGDAMNSSA GFSESGPAPM DSESDLRSSF IDFFGRESHE MQRVSRGVDI SGGFDDAMEE DVEIELTLGI
101: GAGSVTGDKE TDSGRVEVGT DLIEEEEEEE ESEEEEEEEE YSVPVNNDAL VEDFNVHEES LEDFMMNVYE DSSIMDMTEE ELLDILPGLG GEYHGDYFDD
201: IFEPPPVMAT RAASKRVVDE LPVVEINSEE LRNGKIACAI CMGDFVVKEK VTRLPCWHYY HGECIVPWLE MKNTCPVCRF ALPTDDL

Best Arabidopsis Sequence Match ( AT5G15820.1 )
(BLAST)

001: MSSAKLFGCS INVNVEAEEE EGGDGGSSTN VEVSRSGNQP DCEAMSFSNQ MEIGVRNTYY QFLESNSDSG SDSMYAEPEF IDFFDRESYE VDTVREVCVS
101: SNQRVSTPGY FNIWDQDVDL GLGIGLGSRS GSGQLPGDSG GVGVEVGRGV TPVEYNLFGE EAMVVDEVLE WENFNNAIHL VQEPAYASME GEEEEEEDEV
201: VMEFAASIYS DAWEILLYDN MTNSAPMDLD VEVWLDSVDG YAPMDYNAII GQMFDNETGI KGTPPASKSV VDGLPDVELT IEELSSVSIV CAICKDEVVF
301: KEKVKRLPCK HYYHGECIIP WLGIRNTCPV CRHELPTDDL EYERKRRA

Arabidopsis Description

AT5g15820/F14F8_200 [Source:UniProtKB/TrEMBL;Acc:Q9LFU4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.