Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os03t0743500-02 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G08139.1 | Os03t0743500-02 | AT4G14640.1 | 17360592 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU84547 | Sorghum | cytoskeleton, cytosol, nucleus | 43.2 | 41.86 |
| Zm00001d053704_P001 | Maize | cytosol | 37.33 | 39.33 |
| Os06t0633500-01 | Rice | cytosol, nucleus | 10.93 | 33.06 |
| Os08t0487500-01 | Rice | plastid | 17.07 | 23.62 |
| TraesCS6D01G160300.1 | Wheat | nucleus | 21.07 | 22.7 |
| HORVU6Hr1G034800.1 | Barley | cytosol, nucleus | 21.07 | 21.35 |
| Os03t0271600-01 | Rice | plastid | 15.47 | 20.79 |
| TraesCS6B01G198800.1 | Wheat | nucleus | 21.6 | 20.2 |
| Os03t0351800-01 | Rice | nucleus | 15.2 | 20.14 |
| Os02t0727700-01 | Rice | cytosol, nucleus, plastid | 15.73 | 18.97 |
| KRH56750 | Soybean | cytosol | 17.07 | 18.71 |
| KRH03189 | Soybean | nucleus | 17.07 | 18.03 |
| Os03t0324900-01 | Rice | cytosol | 14.93 | 17.5 |
| KRH18313 | Soybean | nucleus | 17.33 | 17.38 |
| CDX78323 | Canola | cytosol | 13.33 | 17.36 |
| CDY69134 | Canola | cytosol | 13.33 | 17.18 |
| Bra005970.1-P | Field mustard | cytosol | 13.07 | 16.9 |
| Os06t0101300-01 | Rice | nucleus | 15.2 | 16.86 |
| KRG93748 | Soybean | nucleus, plastid | 17.07 | 16.84 |
| Solyc02g065650.1.1 | Tomato | cytosol, nucleus, plastid | 17.6 | 16.62 |
| Os03t0812200-01 | Rice | nucleus | 16.27 | 16.53 |
| Os05t0110000-01 | Rice | mitochondrion | 14.67 | 16.52 |
| Os05t0495000-00 | Rice | mitochondrion | 12.53 | 16.43 |
| Os01t0276600-01 | Rice | nucleus | 14.4 | 16.41 |
| Os10t0487400-01 | Rice | mitochondrion, nucleus, plastid, vacuole | 16.0 | 16.22 |
| VIT_17s0000g04730.t01 | Wine grape | nucleus | 18.67 | 15.95 |
| PGSC0003DMT400068309 | Potato | cytosol | 16.8 | 15.83 |
| Solyc02g089410.2.1 | Tomato | nucleus | 13.6 | 15.6 |
| Os05t0488800-01 | Rice | nucleus | 13.33 | 15.48 |
| GSMUA_Achr8P24510_001 | Banana | cytosol | 16.0 | 15.15 |
| CDY34722 | Canola | cytosol | 15.73 | 15.13 |
| PGSC0003DMT400003515 | Potato | nucleus | 14.93 | 15.09 |
| CDY34721 | Canola | cytosol | 15.47 | 14.87 |
| VIT_14s0083g00710.t01 | Wine grape | nucleus | 15.47 | 14.83 |
| Bra021467.1-P | Field mustard | nucleus | 15.2 | 14.62 |
| Os01t0802000-01 | Rice | nucleus | 12.8 | 14.59 |
| Os01t0972000-01 | Rice | nucleus | 12.8 | 14.37 |
| AT5G15820.1 | Thale cress | cytosol | 13.33 | 14.37 |
| Os02t0767600-00 | Rice | mitochondrion | 12.53 | 14.33 |
| CDX69496 | Canola | cytosol | 10.93 | 14.24 |
| Bra008671.1-P | Field mustard | nucleus | 10.67 | 13.94 |
| AT3G02340.2 | Thale cress | cytosol | 15.2 | 13.94 |
| CDY26465 | Canola | cytosol | 12.53 | 13.86 |
| CDY02194 | Canola | peroxisome | 14.67 | 13.82 |
| CDY21513 | Canola | cytosol | 13.07 | 13.76 |
| CDX69973 | Canola | cytosol | 13.07 | 13.61 |
| CDY51628 | Canola | peroxisome | 14.4 | 13.3 |
| AT5G08139.1 | Thale cress | cytosol | 13.33 | 13.3 |
| PGSC0003DMT400063293 | Potato | nucleus | 15.2 | 13.19 |
| Bra013006.1-P | Field mustard | nucleus | 14.67 | 13.19 |
| Bra009323.1-P | Field mustard | cytosol | 13.07 | 12.93 |
| CDX90972 | Canola | cytosol | 11.47 | 12.84 |
| CDX85531 | Canola | cytosol | 11.73 | 12.83 |
| GSMUA_Achr3P06300_001 | Banana | cytosol | 17.33 | 12.45 |
| AT5G60820.1 | Thale cress | cytosol | 13.87 | 12.41 |
| Solyc03g114680.2.1 | Tomato | nucleus | 16.27 | 12.25 |
| Bra023539.1-P | Field mustard | cytoskeleton, cytosol, nucleus | 12.0 | 11.34 |
| Os12t0118700-01 | Rice | nucleus | 12.8 | 9.62 |
| Os11t0119200-01 | Rice | nucleus | 12.27 | 9.37 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | EMBL:AK064615 | ProteinID:BAD34014.1 | ProteinID:BAF08071.1 | ProteinID:BAS77405.1 |
| ProteinID:EAZ22050.1 | GO:GO:0000209 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006464 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0043161 |
| GO:GO:0061630 | InterPro:IPR001841 | InterPro:IPR013083 | EnsemblPlantsGene:Os02g0191500 | EnsemblPlants:Os02t0191500-01 | PFAM:PF13639 |
| PFscan:PS50089 | PANTHER:PTHR44679 | UniProt:Q69M03 | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0000358D30 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : |
Description
Similar to Goliath homolog precursor (RING finger protein 130). (Os02t0191500-01)
Coordinates
chr2:+:5063137..5066609
Molecular Weight (calculated)
39686.4 Da
IEP (calculated)
3.751
GRAVY (calculated)
-0.291
Length
375 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGLAGDDSS FFGDDGDGDE FCYGPFDVED LCYGASDVDD DWEEFCDGPF GGGGVEEFCV SGFSVRDLSD ASSSGARETG DPHDDDPLPQ TLARSLDSDG
101: DLSATLHQIV SAMRLSEDEE EEEEEELLVL GHGHGVGIGG GGDVDGFMVS AFDLDTAMAI GGILEDIHEV MGADEVREEV VVEEEEAGNG GGIMPNGFEF
201: GPPPRAISGT AAGFRMMVDA DDTDSDDFQF VEVLGGGQVR EAGAGMSMRP SRASQLVVES LPEATLSEEE ASRGCAVCKD SFASGQIVAL LPCKHYFHGD
301: CIWPWLTIRT TCPVCRHQVR TEDDDYEQRM ARRVIVLAAV EHQGAPAQGC GDSATMGAEG ASECVVENGP EKTSF
101: DLSATLHQIV SAMRLSEDEE EEEEEELLVL GHGHGVGIGG GGDVDGFMVS AFDLDTAMAI GGILEDIHEV MGADEVREEV VVEEEEAGNG GGIMPNGFEF
201: GPPPRAISGT AAGFRMMVDA DDTDSDDFQF VEVLGGGQVR EAGAGMSMRP SRASQLVVES LPEATLSEEE ASRGCAVCKD SFASGQIVAL LPCKHYFHGD
301: CIWPWLTIRT TCPVCRHQVR TEDDDYEQRM ARRVIVLAAV EHQGAPAQGC GDSATMGAEG ASECVVENGP EKTSF
001: MSSAKLFGCS INVNVEAEEE EGGDGGSSTN VEVSRSGNQP DCEAMSFSNQ MEIGVRNTYY QFLESNSDSG SDSMYAEPEF IDFFDRESYE VDTVREVCVS
101: SNQRVSTPGY FNIWDQDVDL GLGIGLGSRS GSGQLPGDSG GVGVEVGRGV TPVEYNLFGE EAMVVDEVLE WENFNNAIHL VQEPAYASME GEEEEEEDEV
201: VMEFAASIYS DAWEILLYDN MTNSAPMDLD VEVWLDSVDG YAPMDYNAII GQMFDNETGI KGTPPASKSV VDGLPDVELT IEELSSVSIV CAICKDEVVF
301: KEKVKRLPCK HYYHGECIIP WLGIRNTCPV CRHELPTDDL EYERKRRA
101: SNQRVSTPGY FNIWDQDVDL GLGIGLGSRS GSGQLPGDSG GVGVEVGRGV TPVEYNLFGE EAMVVDEVLE WENFNNAIHL VQEPAYASME GEEEEEEDEV
201: VMEFAASIYS DAWEILLYDN MTNSAPMDLD VEVWLDSVDG YAPMDYNAII GQMFDNETGI KGTPPASKSV VDGLPDVELT IEELSSVSIV CAICKDEVVF
301: KEKVKRLPCK HYYHGECIIP WLGIRNTCPV CRHELPTDDL EYERKRRA
Arabidopsis Description
AT5g15820/F14F8_200 [Source:UniProtKB/TrEMBL;Acc:Q9LFU4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.