Factsheet for Os01t0276600-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G192700.1	Wheat	cytosol	52.89	47.28
Zm00001d040445_P001	Maize	nucleus	49.24	46.82
TraesCS3A01G189200.1	Wheat	cytosol	52.89	46.4
TraesCS3B01G218400.1	Wheat	cytosol	52.28	46.24
HORVU3Hr1G039220.1	Barley	cytosol	52.89	46.15
EES00577	Sorghum	nucleus	49.54	45.4
Zm00001d008237_P001	Maize	nucleus	48.02	45.27
GSMUA_Achr7P18340_001	Banana	nucleus	31.91	35.0
Os03t0324900-01	Rice	cytosol	34.04	35.0
GSMUA_Achr9P05060_001	Banana	nucleus	18.84	33.33
GSMUA_Achr5P07680_001	Banana	nucleus	29.79	32.89
GSMUA_Achr6P08590_001	Banana	nucleus	29.18	32.76
Os06t0633500-01	Rice	cytosol, nucleus	11.85	31.45
GSMUA_Achr10P...	Banana	nucleus	28.27	30.69
Os03t0812200-01	Rice	nucleus	33.74	30.08
Os05t0488800-01	Rice	nucleus	26.75	27.24
Os03t0351800-01	Rice	nucleus	21.88	25.44
Os03t0271600-01	Rice	plastid	19.15	22.58
Os08t0487500-01	Rice	plastid	18.54	22.51
Os06t0101300-01	Rice	nucleus	22.8	22.19
Os05t0495000-00	Rice	mitochondrion	18.54	21.33
Os10t0487400-01	Rice	mitochondrion, nucleus, plastid, vacuole	23.71	21.08
Os01t0972000-01	Rice	nucleus	20.67	20.36
Os01t0802000-01	Rice	nucleus	20.06	20.06
Os05t0110000-01	Rice	mitochondrion	18.54	18.32
Os02t0767600-00	Rice	mitochondrion	17.93	17.99
Os02t0727700-01	Rice	cytosol, nucleus, plastid	16.11	17.04
Os02t0191500-01	Rice	nucleus	16.41	14.4
Os11t0119200-01	Rice	nucleus	15.2	10.18
Os12t0118700-01	Rice	nucleus	14.89	9.82

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	EntrezGene:4324262	ProteinID:BAA88184.1	ProteinID:BAF04644.1	ProteinID:BAS71552.1
GO:GO:0000209	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016740	GO:GO:0019538	GO:GO:0043161
GO:GO:0048364	GO:GO:0051301	GO:GO:0061630	InterPro:IPR001841	InterPro:IPR013083	EnsemblPlantsGene:Os01g0276600
EnsemblPlants:Os01t0276600-01	PFAM:PF13639	PFAM:PF14369	PFscan:PS50089	PANTHER:PTHR44576	PANTHER:PTHR44576:SF5
UniProt:Q9SDG0	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI00000A3BD0	RefSeq:XP_015619754.1	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

RING Finger ProteinZinc finger, RING/FYVE/PHD-type domain containing protein. (Os01t0276600-01)

Coordinates

chr1:+:9690348..9692094

Molecular Weight (calculated)

34273.1 Da

IEP (calculated)

5.239

GRAVY (calculated)

-0.250

Length

329 amino acids

Sequence
(BLAST)

001: MAEEAAAGGL YYCHMCASTV SAVAAAEGEV EIKCPYCHSG FVEEIESARG VATGGGGAIS SVWAPIIDGM VGGGGGDAVR RHRRSRRLAD AAGADDGYYR
101: DLALLDFSES RRRTAALLLL MQEFRERQLQ RLESATATIS AAAAEAGAVV GTSRDAEGVA LADYFLGPGL DALMQRVGDG DAGRQGTLPA KKEAVESMPT
201: VEVAAGGDCD SACAVCLEDY AAGERATEMP CRHRFHAKCI VPWLKMHSSC PVCRFQLPTD DDDDSSKSAR GGAAHSGGGR RLSQPAPRVD GGGLGRLPAV
301: MQELRSILSQ PSPASTSGSS SHAQQHSDE

Best Arabidopsis Sequence Match ( AT1G55530.2 )
(BLAST)

001: MEEAVVTRYW CHMCSQTVNP VMEAEIKCPF CQSGFVEEME DDDDHDSSDP ADVRANNSLW APILMELMND PVRRRRNQSV ESVEDNQNEV QTENNEDDGE
101: NDLDWQLQEI LRRRRRHSAA VLQLLQGIRA GLSVESESTG NGGNNPGRVI LINTSNQTIT VQNSADMDSV PAGSLGDYFI GPGFEMLLQR LAENDPNRYG
201: TPPAKKEAVE ALATVKIEET LQCSVCLDDF EIGTEAKLMP CTHKFHSDCL LPWLELHSSC PVCRYQLPAD EAKTDSVTTT SDNNGSSSAS ATTSHGAENS
301: DGNRRQEEEE EEEEEEEEEN ENNDGSGFSI PWPFSTLFSS SQDSNAPTDS S

Arabidopsis Description

At1g55530/T5A14_7 [Source:UniProtKB/TrEMBL;Acc:Q9ZVU8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.