Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 2
- golgi 2
- plasma membrane 2
- endoplasmic reticulum 2
- vacuole 3
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr5P07680_001 | Banana | nucleus | 61.29 | 38.26 |
| GSMUA_Achr11P... | Banana | nucleus | 53.23 | 36.67 |
| GSMUA_Achr10P... | Banana | nucleus | 56.45 | 34.65 |
| GSMUA_Achr7P18340_001 | Banana | nucleus | 51.61 | 32.0 |
| GSMUA_Achr5P19380_001 | Banana | plastid | 31.72 | 30.89 |
| GSMUA_Achr6P08590_001 | Banana | nucleus | 47.85 | 30.38 |
| Os03t0324900-01 | Rice | cytosol | 43.01 | 25.0 |
| Zm00001d047560_P001 | Maize | cytosol | 39.78 | 23.95 |
| GSMUA_Achr8P09890_001 | Banana | nucleus | 29.03 | 23.38 |
| Zm00001d040445_P001 | Maize | nucleus | 41.4 | 22.25 |
| KXG39475 | Sorghum | cytosol | 38.17 | 22.12 |
| TraesCS4A01G129800.1 | Wheat | cytosol | 37.1 | 21.3 |
| Zm00001d008237_P001 | Maize | nucleus | 39.78 | 21.2 |
| GSMUA_Achr7P13060_001 | Banana | mitochondrion | 27.96 | 21.14 |
| HORVU4Hr1G051610.2 | Barley | cytosol | 38.71 | 20.87 |
| EES00577 | Sorghum | nucleus | 39.78 | 20.61 |
| GSMUA_AchrUn_... | Banana | cytosol, mitochondrion, nucleus, plastid | 28.49 | 20.46 |
| TraesCS4B01G174800.1 | Wheat | cytosol | 37.63 | 20.0 |
| GSMUA_AchrUn_... | Banana | nucleus | 27.42 | 19.77 |
| TraesCS4D01G176700.1 | Wheat | cytosol | 36.56 | 19.54 |
| TraesCS3B01G218400.1 | Wheat | cytosol | 38.17 | 19.09 |
| Os01t0276600-01 | Rice | nucleus | 33.33 | 18.84 |
| GSMUA_AchrUn_... | Banana | mitochondrion, plastid | 35.48 | 18.8 |
| GSMUA_Achr7P15040_001 | Banana | mitochondrion | 31.72 | 18.67 |
| TraesCS3D01G192700.1 | Wheat | cytosol | 36.56 | 18.48 |
| TraesCS3A01G189200.1 | Wheat | cytosol | 36.56 | 18.13 |
| GSMUA_Achr11P... | Banana | mitochondrion | 29.03 | 18.06 |
| GSMUA_Achr2P03780_001 | Banana | cytosol | 33.87 | 17.95 |
| HORVU3Hr1G039220.1 | Barley | cytosol | 36.02 | 17.77 |
| GSMUA_Achr6P23590_001 | Banana | mitochondrion, nucleus | 32.26 | 17.44 |
| GSMUA_Achr10P... | Banana | mitochondrion | 30.65 | 16.91 |
| GSMUA_Achr5P07070_001 | Banana | nucleus | 29.57 | 16.72 |
| GSMUA_Achr10P... | Banana | nucleus | 24.19 | 15.96 |
| GSMUA_Achr10P... | Banana | mitochondrion | 33.87 | 15.67 |
| GSMUA_Achr2P19140_001 | Banana | mitochondrion | 28.49 | 14.64 |
| GSMUA_Achr4P02460_001 | Banana | nucleus | 22.58 | 10.14 |
| GSMUA_Achr8P24510_001 | Banana | cytosol | 19.89 | 9.34 |
| GSMUA_Achr3P06300_001 | Banana | cytosol | 19.89 | 7.09 |
| GSMUA_Achr11P... | Banana | cytosol | 23.66 | 6.07 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr9P05060_001 | EnsemblPlants:GSMUA_Achr9T05060_001 | EnsemblPlantsGene:GSMUA_Achr9G05060_001 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR44576 | PFAM:PF13639 | PFscan:PS50089 | SEG:seg |
| SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0002969A31 | UniProt:M0TXL5 | MapMan:35.1 | : |
Description
zinc finger, C3HC4 type domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr9G05060_001]
Coordinates
chr9:-:3286546..3287309
Molecular Weight (calculated)
19190.5 Da
IEP (calculated)
4.954
GRAVY (calculated)
-0.163
Length
186 amino acids
Sequence
(BLAST)
(BLAST)
001: MVLINLLNSA MEGSLGLDLL LQHLAENDPN CYGTPPAGKA AVEAMPTVKI EESMSCSICL EELEAGAEAR EMPCKHKFHG GCILPWLELH SSCPVCRFQL
101: ATDESKVSNV SASAGAGVSA GATRVEAHGQ SGSSSDGGSE RGFRLPVPWP LTGLFSLLGS HRTGNSSSQP SSSSSSTGSS SPTDAN
101: ATDESKVSNV SASAGAGVSA GATRVEAHGQ SGSSSDGGSE RGFRLPVPWP LTGLFSLLGS HRTGNSSSQP SSSSSSTGSS SPTDAN
001: MEEAVVTRYW CHMCSQTVNP VMEAEIKCPF CQSGFVEEME DDDDHDSSDP ADVRANNSLW APILMELMND PVRRRRNQSV ESVEDNQNEV QTENNEDDGE
101: NDLDWQLQEI LRRRRRHSAA VLQLLQGIRA GLSVESESTG NGGNNPGRVI LINTSNQTIT VQNSADMDSV PAGSLGDYFI GPGFEMLLQR LAENDPNRYG
201: TPPAKKEAVE ALATVKIEET LQCSVCLDDF EIGTEAKLMP CTHKFHSDCL LPWLELHSSC PVCRYQLPAD EAKTDSVTTT SDNNGSSSAS ATTSHGAENS
301: DGNRRQEEEE EEEEEEEEEN ENNDGSGFSI PWPFSTLFSS SQDSNAPTDS S
101: NDLDWQLQEI LRRRRRHSAA VLQLLQGIRA GLSVESESTG NGGNNPGRVI LINTSNQTIT VQNSADMDSV PAGSLGDYFI GPGFEMLLQR LAENDPNRYG
201: TPPAKKEAVE ALATVKIEET LQCSVCLDDF EIGTEAKLMP CTHKFHSDCL LPWLELHSSC PVCRYQLPAD EAKTDSVTTT SDNNGSSSAS ATTSHGAENS
301: DGNRRQEEEE EEEEEEEEEN ENNDGSGFSI PWPFSTLFSS SQDSNAPTDS S
Arabidopsis Description
At1g55530/T5A14_7 [Source:UniProtKB/TrEMBL;Acc:Q9ZVU8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.