Factsheet for TraesCS4B01G174800.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G129800.1	Wheat	cytosol	87.71	94.75
TraesCS4D01G176700.1	Wheat	cytosol	93.71	94.25
HORVU4Hr1G051610.2	Barley	cytosol	91.43	92.75
Os03t0324900-01	Rice	cytosol	59.71	65.31
Zm00001d047560_P001	Maize	cytosol	56.29	63.75
KXG39475	Sorghum	cytosol	57.14	62.31
GSMUA_Achr7P18340_001	Banana	nucleus	32.29	37.67
GSMUA_Achr9P05060_001	Banana	nucleus	20.0	37.63
GSMUA_Achr6P08590_001	Banana	nucleus	30.0	35.84
GSMUA_Achr5P07680_001	Banana	nucleus	29.71	34.9
GSMUA_Achr10P...	Banana	nucleus	29.14	33.66
TraesCS3B01G218400.1	Wheat	cytosol	35.71	33.6
TraesCS1B01G316300.1	Wheat	nucleus	29.71	31.33
TraesCS5B01G480100.1	Wheat	nucleus	32.57	28.36
TraesCS3B01G474100.1	Wheat	mitochondrion	22.86	27.78
TraesCS4B01G209100.1	Wheat	plastid	20.57	25.71
TraesCS7B01G144100.1	Wheat	plastid	18.29	23.79
TraesCS1B01G179000.1	Wheat	cytosol, mitochondrion, plastid, vacuole	24.86	23.58
TraesCS3B01G361000.1	Wheat	cytosol	20.57	20.99
TraesCS3B01G595200.1	Wheat	cytosol	23.71	20.8
TraesCS1B01G036900.1	Wheat	cytosol	22.0	19.3
TraesCS7B01G074800.1	Wheat	mitochondrion	17.71	19.25
TraesCS6B01G318600.1	Wheat	cytosol, plastid	16.0	18.24
TraesCS6B01G361600.1	Wheat	mitochondrion	16.86	17.51
TraesCS7B01G293600.1	Wheat	cytosol	15.43	16.36
TraesCS6B01G198800.1	Wheat	nucleus	17.43	15.21
TraesCS5B01G144700.1	Wheat	nucleus	18.0	12.35

Protein Annotations

EnsemblPlants:TraesCS4B01G174800.1	EnsemblPlantsGene:TraesCS4B01G174800	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR44576	PANTHER:PTHR44576:SF2	PFAM:PF13639	PFAM:PF14369	PFscan:PS50089
SEG:seg	SMART:SM00184	SUPFAM:SSF57850	TIGR:cd16454	MapMan:35.1	:

Description

No Description!

Coordinates

chr4B:-:383145124..383146176

Molecular Weight (calculated)

36867.1 Da

IEP (calculated)

4.521

GRAVY (calculated)

-0.339

Length

350 amino acids

Sequence
(BLAST)

001: MPDGDSVPNN FLYAVLGPGD RNSQEKDMAE EPGATSRYYC HMCSVIVRPE LGVEEVKCPH CCSGFVEEMA DGRRSSNAVG DHGTTATGAG PDDAGARSEL
101: AVPPWPPILM DLLGVSYGLD GGDLAALARR QYRHLAFLQL LNALQEGDAN ADGDAPDPGL ERLVLVSPAD AHAMLMSEGR ASNGAGAGRG AGLTLGELIL
201: GPGLDLLLEY LAETDPSRQG TLPAKMEAVA ALPTVKVSEA ATCPVCLDEF AAGGEAKEMP CKHRFHDVCI LPWLEAHSSC PVCRYQLPTD EATEPAGNGT
301: EETADVSSGN ARRDVEGDSD GGSSGRRRWL ARPFGRLFSR RSNGSSSSSR

Best Arabidopsis Sequence Match ( AT1G55530.1 )
(BLAST)

001: MEEAVVTRYW CHMCSQTVNP VMEAEIKCPF CQSGFVEEME DDDDHDSSDP ADVRANNSLW APILMELMND PVRRRRNQSV ESVEDNQNEV QTENNEDDGE
101: NDLDWQLQEI LRRRRRHSAA VLQLLQGIRA GLSVESESTG NGGNNPGRVI LINTSNQTIT VQNSADMDSV PAGSLGDYFI GPGFEMLLQR LAENDPNRYG
201: TPPAKKEAVE ALATVKIEET LQCSVCLDDF EIGTEAKLMP CTHKFHSDCL LPWLELHSSC PVCRYQLPAD EAKTDSVTTT SDNNGSSSAS ATTSHGAENS
301: DGNRRQEEEE EEEEEEEEEN ENNDGSGFSI PWPFSTLFSS SQDSNAPTDS S

Arabidopsis Description

At1g55530/T5A14_7 [Source:UniProtKB/TrEMBL;Acc:Q9ZVU8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.