Factsheet for TraesCS3B01G595200.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G532300.1	Wheat	cytosol	94.99	98.19
HORVU7Hr1G055010.1	Barley	cytosol	49.12	88.69
HORVU3Hr1G041030.1	Barley	mitochondrion	79.2	81.65
HORVU3Hr1G115000.7	Barley	mitochondrion	72.43	73.72
TraesCS4B01G209100.1	Wheat	plastid	45.11	64.29
TraesCS1B01G036900.1	Wheat	cytosol	63.91	63.91
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	54.89	62.39
GSMUA_Achr6P23590_001	Banana	mitochondrion, nucleus	49.12	56.98
KRH10229	Soybean	nucleus	43.86	55.73
VIT_06s0004g05090.t01	Wine grape	mitochondrion, nucleus	53.63	55.44
KRH23103	Soybean	nucleus	43.36	55.1
KRG97885	Soybean	mitochondrion	47.87	53.5
KRH24759	Soybean	nucleus	48.12	53.19
KRH29763	Soybean	nucleus	47.87	52.91
PGSC0003DMT400016233	Potato	nucleus	51.13	51.78
Solyc04g011610.1.1	Tomato	nucleus	51.13	51.65
PGSC0003DMT400005512	Potato	mitochondrion	49.87	51.55
Solyc06g005650.2.1	Tomato	extracellular	25.81	51.5
KRH30994	Soybean	nucleus	49.87	50.64
CDY20473	Canola	nucleus, plastid	41.85	50.0
Bra005020.1-P	Field mustard	nucleus, plastid	41.6	48.68
CDX74839	Canola	cytosol, plastid	39.35	48.46
Bra000143.1-P	Field mustard	nucleus	43.86	46.67
CDX80258	Canola	plastid	41.35	46.48
CDY24951	Canola	nucleus	43.61	46.4
CDY61251	Canola	cytosol	41.85	46.26
CDY07641	Canola	nucleus	43.36	46.26
CDY53450	Canola	cytosol	37.09	45.96
Bra019382.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	42.36	45.31
Bra020313.1-P	Field mustard	plastid	43.86	44.99
CDY48679	Canola	cytosol, plastid	37.09	44.31
Bra006709.1-P	Field mustard	plastid	43.61	44.27
CDX88709	Canola	cytosol, plastid	43.61	44.16
Bra002559.1-P	Field mustard	plastid	43.61	43.83
CDX99105	Canola	cytosol, plastid	35.34	43.52
AT2G39720.2	Thale cress	nucleus	43.11	42.89
KRH15082	Soybean	nucleus	40.85	42.67
AT3G46620.1	Thale cress	cytosol, plastid	41.85	42.28
CDY33046	Canola	plastid	36.09	42.11
KRH73053	Soybean	nucleus	41.1	41.94
AT5G59550.2	Thale cress	nucleus, plastid	44.61	34.77
TraesCS3B01G474100.1	Wheat	mitochondrion	22.81	31.6
TraesCS1B01G179000.1	Wheat	cytosol, mitochondrion, plastid, vacuole	24.31	26.29
TraesCS7B01G074800.1	Wheat	mitochondrion	21.05	26.09
TraesCS3B01G361000.1	Wheat	cytosol	22.31	25.95
TraesCS6B01G361600.1	Wheat	mitochondrion	21.05	24.93
TraesCS6B01G318600.1	Wheat	cytosol, plastid	18.8	24.43
TraesCS1B01G316300.1	Wheat	nucleus	19.8	23.8
TraesCS7B01G144100.1	Wheat	plastid	16.04	23.79
TraesCS4B01G174800.1	Wheat	cytosol	20.8	23.71
TraesCS5B01G480100.1	Wheat	nucleus	23.31	23.13
TraesCS3B01G218400.1	Wheat	cytosol	21.05	22.58
TraesCS7B01G293600.1	Wheat	cytosol	15.79	19.09
TraesCS6B01G198800.1	Wheat	nucleus	17.54	17.46
TraesCS5B01G144700.1	Wheat	nucleus	17.04	13.33

Protein Annotations

EnsemblPlants:TraesCS3B01G595200.1	EnsemblPlantsGene:TraesCS3B01G595200	Gene3D:3.30.40.10	InterPro:DUF1117	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR44274	PANTHER:PTHR44274:SF3	PFAM:PF06547	PFAM:PF13639
PFAM:PF14369	PFscan:PS50089	SEG:seg	SMART:SM00184	SUPFAM:SSF57850	TIGR:cd16667
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr3B:-:818275851..818277457

Molecular Weight (calculated)

42360.5 Da

IEP (calculated)

7.591

GRAVY (calculated)

-0.395

Length

399 amino acids

Sequence
(BLAST)

001: MDRWAATAAG PAAAGVTGTL PSYWCYSCER FVRTAGDAGL VCPGCDGGFL EQMDAPPPPR RAAAPSAFLR RRAAEAPTEV RPRRGRRGGA SGDRSGSPYN
101: PVIVLRRSAA PPGDEAPGAT SSFELFYDDG AGSGLRPLPE SMSDFLMGSG FERLLEQLAQ IEAGGFGAVR PCDNPPASKA AVESMPTVVV AACHVGADSH
201: CAVCKEAFEL GDEAREMPCG HMYHQDCILP WLALRNSCPV CRHELPTDVA RPAPASDLGA ADDQGSNTGA EAGSEEETTV GLTIWRLPGG GFAVGRFAGG
301: RRAGERELPV VYTEVDGGFN NGGAPRRISW SSRGSRSSQR GVIRRMFNNM FACFGRTHST NVTRASSSRS EWSSVFTRGL RSRSTSWRSQ DSHADAIAR

Best Arabidopsis Sequence Match ( AT3G46620.1 )
(BLAST)

001: MMPNSRSATI TPTTESTTTT TTTTTTLTTS YWCYSCTRFI SVWEDQDANA GVLCPYCNGG FIEEIEDSSN STVAAIPAST PEVRSVEETH RSIIRRRRSN
101: RRTSFNPVIV LHGGGGGGAG ERVENEEGDG ATRERRAYEF YYDDGSGSGL RPLPDSVSEI LMGSGFERLL EQLSQIEASG NGIGRSGNPP ASKSAIESLP
201: RVEISDCHTK AEANCAVCTE VFEAGIEGRE MPCKHIFHGD CIVPWLSIRN SCPVCRFELP SDPIQRSNEE EHAVGMTIWR LPGGGFAVGR FNAGVREGER
301: ILPVVLTEMD GGGLGSNEGP RRISWVRAHE TPEMSRNGGR SGNGGRLRRA VRGMVSFMRR VRPSRGSSNS NVIDLDSDGE TRVMNRSTSL IRRFF

Arabidopsis Description

RDUF1E3 ubiquitin-protein ligase RDUF1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SNB6]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.