Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- cytosol 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G595200.1 | Wheat | cytosol | 88.69 | 49.12 |
| TraesCS3D01G532300.1 | Wheat | cytosol | 85.07 | 48.7 |
| Solyc06g005650.2.1 | Tomato | extracellular | 42.53 | 47.0 |
| HORVU3Hr1G041030.1 | Barley | mitochondrion | 68.78 | 39.28 |
| HORVU1Hr1G004330.14 | Barley | cytosol | 61.54 | 33.92 |
| GSMUA_Achr6P23590_001 | Banana | mitochondrion, nucleus | 47.51 | 30.52 |
| KRH23103 | Soybean | nucleus | 42.53 | 29.94 |
| KRH10229 | Soybean | nucleus | 42.08 | 29.62 |
| HORVU3Hr1G115000.7 | Barley | mitochondrion | 52.04 | 29.34 |
| KRH24759 | Soybean | nucleus | 47.06 | 28.81 |
| GSMUA_AchrUn_... | Banana | mitochondrion, plastid | 45.7 | 28.77 |
| KRH29763 | Soybean | nucleus | 46.61 | 28.53 |
| HORVU4Hr1G060130.1 | Barley | cytosol | 44.8 | 28.12 |
| VIT_06s0004g05090.t01 | Wine grape | mitochondrion, nucleus | 48.42 | 27.72 |
| CDY53450 | Canola | cytosol | 38.46 | 26.4 |
| CDY20473 | Canola | nucleus, plastid | 39.82 | 26.35 |
| Bra005020.1-P | Field mustard | nucleus, plastid | 40.27 | 26.1 |
| PGSC0003DMT400005512 | Potato | mitochondrion | 45.25 | 25.91 |
| PGSC0003DMT400016233 | Potato | nucleus | 46.15 | 25.89 |
| CDX80258 | Canola | plastid | 41.18 | 25.63 |
| Solyc04g011610.1.1 | Tomato | nucleus | 45.7 | 25.57 |
| KRG97885 | Soybean | mitochondrion | 40.72 | 25.21 |
| CDY61251 | Canola | cytosol | 41.18 | 25.21 |
| KRH30994 | Soybean | nucleus | 44.8 | 25.19 |
| Bra000143.1-P | Field mustard | nucleus | 42.53 | 25.07 |
| Bra020313.1-P | Field mustard | plastid | 43.89 | 24.94 |
| CDY07641 | Canola | nucleus | 42.08 | 24.87 |
| CDY24951 | Canola | nucleus | 42.08 | 24.8 |
| CDX74839 | Canola | cytosol, plastid | 36.2 | 24.69 |
| Bra019382.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 41.63 | 24.66 |
| Bra002559.1-P | Field mustard | plastid | 42.99 | 23.93 |
| CDX88709 | Canola | cytosol, plastid | 42.53 | 23.86 |
| Bra006709.1-P | Field mustard | plastid | 42.08 | 23.66 |
| AT3G46620.1 | Thale cress | cytosol, plastid | 41.18 | 23.04 |
| AT2G39720.2 | Thale cress | nucleus | 41.63 | 22.94 |
| HORVU3Hr1G096110.1 | Barley | mitochondrion | 28.96 | 22.15 |
| CDY48679 | Canola | cytosol, plastid | 33.03 | 21.86 |
| KRH15082 | Soybean | nucleus | 36.65 | 21.2 |
| CDX99105 | Canola | cytosol, plastid | 29.86 | 20.37 |
| KRH73053 | Soybean | nucleus | 35.75 | 20.2 |
| CDY33046 | Canola | plastid | 30.77 | 19.88 |
| AT5G59550.2 | Thale cress | nucleus, plastid | 44.8 | 19.34 |
| HORVU6Hr1G080320.2 | Barley | cytosol, mitochondrion | 25.79 | 17.12 |
| HORVU0Hr1G019650.1 | Barley | mitochondrion | 23.53 | 16.4 |
| HORVU1Hr1G043220.1 | Barley | cytosol, mitochondrion, plastid, vacuole | 26.7 | 16.08 |
| HORVU6Hr1G072430.1 | Barley | cytosol | 24.43 | 14.84 |
| HORVU5Hr1G111530.1 | Barley | nucleus | 26.24 | 14.57 |
| HORVU7Hr1G000850.1 | Barley | cytosol, mitochondrion, nucleus | 22.62 | 14.01 |
| HORVU4Hr1G051610.2 | Barley | cytosol | 21.72 | 13.91 |
| HORVU3Hr1G039220.1 | Barley | cytosol | 23.08 | 13.53 |
| HORVU1Hr1G068950.2 | Barley | golgi | 23.53 | 13.47 |
| HORVU6Hr1G034800.1 | Barley | cytosol, nucleus | 22.17 | 13.24 |
| HORVU7Hr1G092570.1 | Barley | cytosol | 16.74 | 9.66 |
Protein Annotations
| EnsemblPlants:HORVU7Hr1G055010.1 | EnsemblPlantsGene:HORVU7Hr1G055010 | Gene3D:3.30.40.10 | InterPro:IPR013083 | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR44274 |
| PANTHER:PTHR44274:SF3 | PFAM:PF14369 | SEG:seg | SUPFAM:SSF57850 | UniParc:UPI000B47F2DF | UniProt:A0A287WKC5 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr7H:+:222934962..222936149
Molecular Weight (calculated)
23420.5 Da
IEP (calculated)
4.784
GRAVY (calculated)
-0.178
Length
221 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRWAAMAAG PAVAAGAPSY WCYSCERFVR TEGDAGLACP GYDGGFLEQM DAPPPRRAVS PAAFLRRRAA ADAPAEVRPC RCRRGGASGD RSGSSYNPVI
101: VLRRSAAPPG DDTTGATSSF ELFYDDGAGS GLRPLPESMF DFLMGFGFER LLEQLAQIEA GSFGAIRPCD NPPASNAAVE SMPTVVVAAC HVGVDSHCAV
201: CKEAFELGDE AREMPCSHMY H
101: VLRRSAAPPG DDTTGATSSF ELFYDDGAGS GLRPLPESMF DFLMGFGFER LLEQLAQIEA GSFGAIRPCD NPPASNAAVE SMPTVVVAAC HVGVDSHCAV
201: CKEAFELGDE AREMPCSHMY H
001: MASGSYWCYS CSRFVWVSDS ISCPDCDGGF LELIQEPLDF TPSDSFTTTT TTQHRSPTRF PPPSSSSSTP SASMHADNSP TPTIVTRTRS NRSPNPVIVL
101: RGSAAAPSSD VVSEGLDRSA FQMYYDDGTD SGLRPLPPSM TEFLLGSGFD RLLDQISQIE LNTNRNLRSC EHPPASKSAI EALPLIEIDP THLLSDSQSH
201: CAVCKENFVL KSSAREMPCN HIYHPDCILP WLAIRNSCPV CRHELPAEDL TDGTGAALTA VTATAEEEED SAAGLTIWRL PGGGFAVGRI PGGWRGGDRM
301: MPVVYTEVDG GRLGDERLPR RVAWGSRRGG RDGGGSRERG GGFAGRIMRL FGCFSGSSGS IAAAAAASSG SGSRIRVTRR TRSFSMFSTA SSSSRRRNWL
401: A
101: RGSAAAPSSD VVSEGLDRSA FQMYYDDGTD SGLRPLPPSM TEFLLGSGFD RLLDQISQIE LNTNRNLRSC EHPPASKSAI EALPLIEIDP THLLSDSQSH
201: CAVCKENFVL KSSAREMPCN HIYHPDCILP WLAIRNSCPV CRHELPAEDL TDGTGAALTA VTATAEEEED SAAGLTIWRL PGGGFAVGRI PGGWRGGDRM
301: MPVVYTEVDG GRLGDERLPR RVAWGSRRGG RDGGGSRERG GGFAGRIMRL FGCFSGSSGS IAAAAAASSG SGSRIRVTRR TRSFSMFSTA SSSSRRRNWL
401: A
Arabidopsis Description
RHC2AProbable E3 ubiquitin-protein ligase RHC2A [Source:UniProtKB/Swiss-Prot;Acc:O22283]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.