Factsheet for AT5G59550.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX80258	Canola	plastid	58.59	84.51
CDY48679	Canola	cytosol, plastid	54.3	83.23
Bra002559.1-P	Field mustard	plastid	64.06	82.62
Bra020313.1-P	Field mustard	plastid	62.7	82.52
CDY33046	Canola	plastid	54.49	81.58
CDX88709	Canola	cytosol, plastid	62.5	81.22
Bra006709.1-P	Field mustard	plastid	62.3	81.17
CDY53450	Canola	cytosol	48.83	77.64
AT3G46620.1	Thale cress	cytosol, plastid	54.49	70.63
Os03t0271600-01	Rice	plastid	29.88	54.84
EER95109	Sorghum	plastid	28.71	53.45
TraesCS4A01G095800.1	Wheat	cytosol	29.1	53.21
TraesCS4B01G209100.1	Wheat	plastid	29.1	53.21
TraesCS4D01G209500.1	Wheat	plastid	29.1	53.21
Zm00001d028590_P001	Maize	plastid	28.71	52.88
Zm00001d047824_P001	Maize	plastid	28.71	52.88
KRH10229	Soybean	nucleus	32.42	52.87
GSMUA_Achr7P15040_001	Banana	mitochondrion	32.62	52.85
KRH23103	Soybean	nucleus	32.23	52.55
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	33.79	49.29
VIT_06s0004g05090.t01	Wine grape	mitochondrion, nucleus	37.11	49.22
Solyc06g005650.2.1	Tomato	extracellular	18.75	48.0
KRH29763	Soybean	nucleus	33.79	47.92
GSMUA_Achr10P...	Banana	mitochondrion	31.45	47.77
KRH24759	Soybean	nucleus	33.4	47.37
GSMUA_Achr6P23590_001	Banana	mitochondrion, nucleus	31.25	46.51
GSMUA_Achr5P07070_001	Banana	nucleus	29.69	46.2
PGSC0003DMT400005512	Potato	mitochondrion	34.77	46.11
TraesCS3D01G532300.1	Wheat	cytosol	33.98	45.08
GSMUA_Achr2P19140_001	Banana	mitochondrion	31.84	45.03
HORVU7Hr1G055010.1	Barley	cytosol	19.34	44.8
TraesCS3B01G595200.1	Wheat	cytosol	34.77	44.61
Os05t0110000-01	Rice	mitochondrion	28.71	44.14
Zm00001d035677_P001	Maize	plastid	29.88	43.97
HORVU4Hr1G060130.1	Barley	cytosol	30.08	43.75
TraesCS1A01G029800.1	Wheat	cytosol	33.59	43.11
TraesCS1B01G036900.1	Wheat	cytosol	33.2	42.61
HORVU1Hr1G004330.14	Barley	cytosol	33.2	42.39
TraesCS1D01G030300.1	Wheat	nucleus	33.01	42.04
EES17560	Sorghum	plastid	33.2	41.16
AT2G39720.2	Thale cress	nucleus	32.23	41.15
Zm00001d011076_P001	Maize	plastid	31.05	41.09
GSMUA_Achr10P...	Banana	mitochondrion	32.23	41.04
GSMUA_Achr10P...	Banana	nucleus	21.29	38.65
HORVU3Hr1G041030.1	Barley	mitochondrion	28.91	38.24
Os01t0972000-01	Rice	nucleus	24.8	38.02
HORVU3Hr1G115000.7	Barley	mitochondrion	27.93	36.48
AT3G56580.1	Thale cress	mitochondrion	16.41	26.25
AT2G40830.4	Thale cress	mitochondrion	16.8	26.22
AT1G60360.1	Thale cress	nucleus	15.43	24.16
AT3G13430.2	Thale cress	nucleus	14.45	23.49
AT5G64920.1	Thale cress	cytosol	15.04	23.05
AT5G56340.1	Thale cress	nucleus	17.58	22.73
AT3G19950.2	Thale cress	cytosol	16.99	22.54
AT4G26400.1	Thale cress	nucleus	15.04	21.63
AT1G55530.2	Thale cress	nucleus	14.26	20.8
AT5G01980.1	Thale cress	nucleus	15.62	16.23
AT5G60820.1	Thale cress	cytosol	12.89	15.75
AT5G08139.1	Thale cress	cytosol	10.16	13.83
AT5G15820.1	Thale cress	cytosol	8.59	12.64
AT3G02340.2	Thale cress	cytosol	9.77	12.22

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	EntrezGene:836074	UniProt:A0A1P8BDZ2	ProteinID:AED97204.1	ProteinID:ANM69816.1
ArrayExpress:AT5G59550	EnsemblPlantsGene:AT5G59550	RefSeq:AT5G59550	TAIR:AT5G59550	RefSeq:AT5G59550-TAIR-G	EnsemblPlants:AT5G59550.2
EMBL:AY052711	EMBL:AY063719	Unigene:At.9728	ProteinID:BAA97489.1	InterPro:DUF1117	GO:GO:0000209
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006464	GO:GO:0006950	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009414	GO:GO:0009628
GO:GO:0009719	GO:GO:0009737	GO:GO:0009738	GO:GO:0009987	GO:GO:0010200	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	GO:GO:0042787	GO:GO:0043161	GO:GO:0046872	GO:GO:0051865
GO:GO:0061630	InterPro:IPR001841	InterPro:IPR013083	RefSeq:NP_001331469.1	RefSeq:NP_568910.1	PFAM:PF06547
PFAM:PF13639	PFAM:PF14369	PFscan:PS50089	PANTHER:PTHR44274	PANTHER:PTHR44274:SF3	SMART:SM00184
SUPFAM:SSF57850	UniParc:UPI000009E07F	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

zinc finger (C3HC4-type RING finger) family protein [Source:TAIR;Acc:AT5G59550]

Coordinates

chr5:-:23998224..24000166

Molecular Weight (calculated)

56050.9 Da

IEP (calculated)

8.485

GRAVY (calculated)

-0.420

Length

512 amino acids

Sequence
(BLAST)

001: MDPTNSRHGA SFEFSTRRFT LSTFGQNAPS LYVTTVYNSA IIYPVKHSPR VYLPSNPTPL IPLLRIALKT TFSFSHLQTS LSLLWSAILL SSSSQILSPS
101: KKILKMPSTP TTPTTTTPIT ASYWCYSCTR FVSVWADQGT TTVGSVACPH CDGGFIEQIN DSSSAATELT IPASTEVRSI NNNRRSVIRR RRSGRRPSFN
201: PVIVLQGGAG EREEGEEGDA ARDRRAFEFY YDDGSGSGLR PLPDSVSEIL MGSGFERLLE QLSQIEASAT GIGRSGNPPA SKSAIESLPR VEISDCHIGS
301: EANCAVCTEI FETETEAREM PCKHLFHDDC IVPWLSIRNS CPVCRFELPS EPNRRSNNNE EDNAVGMTIW RLPGGGFAVG RFNAAMRDGE RVLPVVLTEM
401: DGGGIGNSQD GPRRISWVRS HGTLESDSNG TGSGSGSGGR LRRMVRGMVS LMRRVRPNRS SSSSSAAIST SSDNLDLNIE VESRVLDRSN SVMRRYFRRN
501: RSNRDSSSSV LH

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.