Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra007253.1-P | Field mustard | mitochondrion, nucleus | 76.25 | 78.71 |
| CDX72127 | Canola | mitochondrion | 76.56 | 77.53 |
| CDY27204 | Canola | mitochondrion, nucleus | 75.31 | 77.24 |
| Bra014684.1-P | Field mustard | nucleus | 44.06 | 73.44 |
| CDX75998 | Canola | nucleus | 44.06 | 73.44 |
| AT2G40830.4 | Thale cress | mitochondrion | 67.5 | 65.85 |
| CDX94901 | Canola | cytosol | 61.56 | 62.74 |
| VIT_08s0040g00590.t01 | Wine grape | nucleus | 53.44 | 54.46 |
| KRH71659 | Soybean | nucleus | 52.19 | 54.05 |
| KRH33121 | Soybean | nucleus | 51.88 | 53.72 |
| Os03t0351800-01 | Rice | nucleus | 43.44 | 49.12 |
| EER92269 | Sorghum | nucleus | 42.81 | 48.07 |
| GSMUA_Achr8P09890_001 | Banana | nucleus | 34.38 | 47.62 |
| HORVU3Hr1G096110.1 | Barley | mitochondrion | 42.81 | 47.4 |
| TraesCS3A01G440000.1 | Wheat | mitochondrion | 42.81 | 47.4 |
| TraesCS3D01G432800.1 | Wheat | mitochondrion | 42.81 | 47.4 |
| GSMUA_AchrUn_... | Banana | nucleus | 38.12 | 47.29 |
| TraesCS3B01G474100.1 | Wheat | mitochondrion | 42.5 | 47.22 |
| Zm00001d047476_P001 | Maize | mitochondrion | 42.81 | 46.92 |
| VIT_06s0009g02350.t01 | Wine grape | mitochondrion | 47.19 | 44.94 |
| GSMUA_AchrUn_... | Banana | cytosol, mitochondrion, nucleus, plastid | 36.25 | 44.79 |
| KRH14643 | Soybean | nucleus | 46.56 | 44.35 |
| Solyc01g009000.2.1 | Tomato | plastid | 43.44 | 43.71 |
| PGSC0003DMT400058464 | Potato | nucleus | 43.44 | 43.71 |
| KRH18631 | Soybean | nucleus | 41.25 | 43.14 |
| PGSC0003DMT400079301 | Potato | nucleus | 38.12 | 40.67 |
| Solyc08g075910.1.1 | Tomato | nucleus | 38.12 | 40.53 |
| KRH73496 | Soybean | mitochondrion | 44.69 | 38.54 |
| KRH18634 | Soybean | nucleus | 26.88 | 36.44 |
| GSMUA_Achr11P... | Banana | mitochondrion | 33.75 | 36.12 |
| AT1G60360.1 | Thale cress | nucleus | 25.0 | 24.46 |
| AT4G26400.1 | Thale cress | nucleus | 27.19 | 24.44 |
| AT3G19950.2 | Thale cress | cytosol | 28.75 | 23.83 |
| AT3G13430.2 | Thale cress | nucleus | 22.81 | 23.17 |
| AT5G56340.1 | Thale cress | nucleus | 27.5 | 22.22 |
| AT1G55530.2 | Thale cress | nucleus | 24.06 | 21.94 |
| AT2G39720.2 | Thale cress | nucleus | 27.19 | 21.7 |
| AT3G46620.1 | Thale cress | cytosol, plastid | 25.94 | 21.01 |
| AT5G64920.1 | Thale cress | cytosol | 21.88 | 20.96 |
| AT5G59550.2 | Thale cress | nucleus, plastid | 26.25 | 16.41 |
| AT5G01980.1 | Thale cress | nucleus | 22.5 | 14.6 |
| AT5G15820.1 | Thale cress | cytosol | 15.62 | 14.37 |
| AT5G60820.1 | Thale cress | cytosol | 17.5 | 13.37 |
| AT5G08139.1 | Thale cress | cytosol | 15.62 | 13.3 |
| AT3G02340.2 | Thale cress | cytosol | 14.38 | 11.25 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | EntrezGene:824825 | ProteinID:AEE79537.1 | ProteinID:AEE79538.1 | ProteinID:AEE79539.1 |
| ArrayExpress:AT3G56580 | EnsemblPlantsGene:AT3G56580 | RefSeq:AT3G56580 | TAIR:AT3G56580 | RefSeq:AT3G56580-TAIR-G | EnsemblPlants:AT3G56580.1 |
| TAIR:AT3G56580.1 | EMBL:AY045983 | EMBL:AY096613 | Unigene:At.26186 | ProteinID:CAB88061.1 | EMBL:DQ059114 |
| GO:GO:0000209 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0006464 | GO:GO:0006950 | GO:GO:0006970 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 |
| GO:GO:0009058 | GO:GO:0009414 | GO:GO:0009628 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0019538 |
| GO:GO:0030104 | GO:GO:0042787 | GO:GO:0043161 | GO:GO:0046872 | GO:GO:0047484 | GO:GO:0061630 |
| GO:GO:1902006 | GO:GO:2000070 | InterPro:IPR001841 | InterPro:IPR013083 | RefSeq:NP_001030874.1 | RefSeq:NP_567039.1 |
| RefSeq:NP_974448.1 | PFAM:PF13639 | PFAM:PF14369 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PFscan:PS50089 | PANTHER:PTHR44290 | PANTHER:PTHR44290:SF1 |
| UniProt:Q94AK4 | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI00000A227C | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD |
| SEG:seg | : | : | : | : | : |
Description
RZF1E3 ubiquitin-protein ligase RZF1 [Source:UniProtKB/Swiss-Prot;Acc:Q94AK4]
Coordinates
chr3:+:20961543..20963817
Molecular Weight (calculated)
35793.4 Da
IEP (calculated)
7.986
GRAVY (calculated)
-0.802
Length
320 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSIRNTHWC HRCQRAVWLR ARDAVCSYCG GGFVEEIDIG PSRAHRDVER DPTFDLMEAF SAFMRSRLAE RSYDREISGR LGSAGSESFS NLAPLLIFGG
101: QAPFRLAGGD NSSVEAFVNG AAPGIGIARG TNAGDYFFGP GLEELIEQLS SGTHHRGPPP APKSSIDALP TIKITQKHLK SSDSHCPVCK DEFELKSEAK
201: QMPCHHIYHS DCIVPWLVQH NSCPVCRKEL PSRGSSSSTQ SSQNRSTNGR ENSRRRNIFS NLWPFRSSSS SSTQNRRDTN NTATAEEGHY HHHQQQQQQH
301: QHQHQQQQSH MGYSGWPFDY
101: QAPFRLAGGD NSSVEAFVNG AAPGIGIARG TNAGDYFFGP GLEELIEQLS SGTHHRGPPP APKSSIDALP TIKITQKHLK SSDSHCPVCK DEFELKSEAK
201: QMPCHHIYHS DCIVPWLVQH NSCPVCRKEL PSRGSSSSTQ SSQNRSTNGR ENSRRRNIFS NLWPFRSSSS SSTQNRRDTN NTATAEEGHY HHHQQQQQQH
301: QHQHQQQQSH MGYSGWPFDY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.