Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78323 | Canola | cytosol | 49.73 | 64.93 |
| Bra005970.1-P | Field mustard | cytosol | 49.73 | 64.48 |
| CDY69134 | Canola | cytosol | 49.73 | 64.26 |
| CDX69973 | Canola | cytosol | 61.17 | 63.89 |
| CDY21513 | Canola | cytosol | 58.51 | 61.8 |
| Bra009323.1-P | Field mustard | cytosol | 61.44 | 60.95 |
| AT5G60820.1 | Thale cress | cytosol | 46.28 | 41.53 |
| Os06t0633500-01 | Rice | cytosol, nucleus | 11.97 | 36.29 |
| KRH56750 | Soybean | cytosol | 31.91 | 35.09 |
| KRH03189 | Soybean | nucleus | 31.38 | 33.24 |
| VIT_17s0000g04730.t01 | Wine grape | nucleus | 37.77 | 32.35 |
| PGSC0003DMT400063293 | Potato | nucleus | 31.91 | 27.78 |
| GSMUA_Achr8P24510_001 | Banana | cytosol | 26.6 | 25.25 |
| Solyc03g114680.2.1 | Tomato | nucleus | 31.91 | 24.1 |
| Os08t0487500-01 | Rice | plastid | 16.76 | 23.25 |
| AT3G02340.2 | Thale cress | cytosol | 24.2 | 22.25 |
| TraesCS7D01G246300.1 | Wheat | plastid | 15.69 | 21.93 |
| Zm00001d031273_P001 | Maize | cytosol, plastid | 16.76 | 21.8 |
| EES14331 | Sorghum | plastid | 16.76 | 21.5 |
| TraesCS6A01G288800.1 | Wheat | cytosol, plastid | 17.55 | 21.5 |
| OQU85475 | Sorghum | cytosol | 18.09 | 21.25 |
| Os02t0727700-01 | Rice | cytosol, nucleus, plastid | 17.55 | 21.22 |
| TraesCS7A01G247700.1 | Wheat | cytosol, plastid | 15.16 | 21.19 |
| TraesCS6B01G318600.1 | Wheat | cytosol, plastid | 17.02 | 20.85 |
| TraesCS7B01G144100.1 | Wheat | plastid | 14.89 | 20.82 |
| AT5G15820.1 | Thale cress | cytosol | 18.88 | 20.4 |
| Zm00001d051736_P001 | Maize | cytosol | 17.82 | 20.3 |
| EER90075 | Sorghum | nucleus | 15.96 | 19.8 |
| Zm00001d046663_P001 | Maize | cytosol | 15.16 | 19.13 |
| GSMUA_Achr3P06300_001 | Banana | cytosol | 26.33 | 18.97 |
| AT5G64920.1 | Thale cress | cytosol | 16.76 | 18.86 |
| HORVU6Hr1G072430.1 | Barley | cytosol | 17.29 | 17.86 |
| AT3G13430.2 | Thale cress | nucleus | 14.36 | 17.14 |
| AT2G40830.4 | Thale cress | mitochondrion | 14.89 | 17.07 |
| TraesCS7D01G387300.1 | Wheat | cytosol | 14.63 | 16.87 |
| TraesCS7B01G293600.1 | Wheat | cytosol | 14.36 | 16.36 |
| TraesCS7A01G391700.1 | Wheat | cytosol | 14.36 | 16.31 |
| AT4G26400.1 | Thale cress | nucleus | 15.43 | 16.29 |
| Zm00001d053704_P001 | Maize | cytosol | 15.16 | 16.01 |
| AT3G56580.1 | Thale cress | mitochondrion | 13.3 | 15.62 |
| AT5G56340.1 | Thale cress | nucleus | 15.96 | 15.15 |
| OQU84547 | Sorghum | cytoskeleton, cytosol, nucleus | 15.43 | 14.99 |
| HORVU7Hr1G092570.1 | Barley | cytosol | 14.89 | 14.62 |
| AT1G55530.2 | Thale cress | nucleus | 13.56 | 14.53 |
| AT3G46620.1 | Thale cress | cytosol, plastid | 15.16 | 14.43 |
| HORVU6Hr1G034800.1 | Barley | cytosol, nucleus | 14.1 | 14.32 |
| TraesCS6D01G160300.1 | Wheat | nucleus | 13.03 | 14.08 |
| AT1G60360.1 | Thale cress | nucleus | 12.23 | 14.07 |
| AT2G39720.2 | Thale cress | nucleus | 14.63 | 13.72 |
| AT3G19950.2 | Thale cress | cytosol | 13.83 | 13.47 |
| Os02t0191500-01 | Rice | nucleus | 13.3 | 13.33 |
| AT5G01980.1 | Thale cress | nucleus | 16.49 | 12.58 |
| TraesCS6B01G198800.1 | Wheat | nucleus | 13.3 | 12.47 |
| AT5G59550.2 | Thale cress | nucleus, plastid | 13.83 | 10.16 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | EntrezGene:830709 | UniProt:A0A178UKV5 | ProteinID:AED91256.1 | EMBL:AK117658 |
| EMBL:AK220636 | EMBL:AK221247 | ArrayExpress:AT5G08139 | EnsemblPlantsGene:AT5G08139 | RefSeq:AT5G08139 | TAIR:AT5G08139 |
| RefSeq:AT5G08139-TAIR-G | EnsemblPlants:AT5G08139.1 | TAIR:AT5G08139.1 | GO:GO:0000209 | GO:GO:0003674 | GO:GO:0003700 |
| GO:GO:0003824 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009056 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0042787 |
| GO:GO:0043161 | GO:GO:0061630 | InterPro:IPR001841 | InterPro:IPR013083 | RefSeq:NP_850790.1 | ProteinID:OAO94428.1 |
| PFAM:PF13639 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50089 | PANTHER:PTHR44679 | UniProt:Q8GYG0 | SMART:SM00184 |
| SUPFAM:SSF57850 | UniParc:UPI00000ADDE0 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : |
Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8GYG0]
Coordinates
chr5:+:2616134..2617888
Molecular Weight (calculated)
41966.5 Da
IEP (calculated)
3.635
GRAVY (calculated)
-0.541
Length
376 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDLLHQRVE QSQVTPPHDD SNIHGDFDNE ATDESRSETC SVVIEGNCDM VIELGLESGS VIVENLGDSD IDVSNDFDEP DDDDFFVGRT DFGLEFRDIA
101: SSGNDIRLIT VESGSDDDDG VENERELWGI DLNEEDVYVN DDDEYEDDDV SVTIPLCWDS LQLEDREVTA DEFDWEEVGG GGGGGVDDER EIRSGFAQID
201: MNDESLISAS PIISLEGLVT RERAEGSGNL GWEVLLNHTL EINFDVDNRE LYIGGDHDDY VQDYDMLFEQ FADAEVSVIG LPPTSKSFLN NLPVVLLEGE
301: NDDDGGLVCA VCKDEMNIGN KAVQLPCNHK YHSECIVPWL KVRNTCPVCR YELPTDDAEY EQRKTQRTTN TFGMVL
101: SSGNDIRLIT VESGSDDDDG VENERELWGI DLNEEDVYVN DDDEYEDDDV SVTIPLCWDS LQLEDREVTA DEFDWEEVGG GGGGGVDDER EIRSGFAQID
201: MNDESLISAS PIISLEGLVT RERAEGSGNL GWEVLLNHTL EINFDVDNRE LYIGGDHDDY VQDYDMLFEQ FADAEVSVIG LPPTSKSFLN NLPVVLLEGE
301: NDDDGGLVCA VCKDEMNIGN KAVQLPCNHK YHSECIVPWL KVRNTCPVCR YELPTDDAEY EQRKTQRTTN TFGMVL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.