Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G08139.1 | KRH31638 | AT4G14640.1 | 17360592 |
| AT5G08139.1 | KRH69070 | AT4G14640.1 | 17360592 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH56750 | Soybean | cytosol | 83.66 | 86.84 |
| Os06t0633500-01 | Rice | cytosol, nucleus | 13.24 | 37.9 |
| VIT_17s0000g04730.t01 | Wine grape | nucleus | 45.35 | 36.67 |
| CDY02194 | Canola | peroxisome | 38.03 | 33.92 |
| CDX69973 | Canola | cytosol | 34.37 | 33.89 |
| CDX78323 | Canola | cytosol | 27.32 | 33.68 |
| PGSC0003DMT400063293 | Potato | nucleus | 40.85 | 33.56 |
| CDY69134 | Canola | cytosol | 27.32 | 33.33 |
| CDY51628 | Canola | peroxisome | 37.46 | 32.76 |
| Bra005970.1-P | Field mustard | cytosol | 26.76 | 32.76 |
| Bra013006.1-P | Field mustard | nucleus | 38.31 | 32.61 |
| AT5G60820.1 | Thale cress | cytosol | 38.03 | 32.22 |
| Bra009323.1-P | Field mustard | cytosol | 34.37 | 32.19 |
| CDY21513 | Canola | cytosol | 32.11 | 32.02 |
| AT5G08139.1 | Thale cress | cytosol | 33.24 | 31.38 |
| Solyc03g114680.2.1 | Tomato | nucleus | 41.69 | 29.72 |
| KRH18313 | Soybean | nucleus | 31.27 | 29.68 |
| KRG93748 | Soybean | nucleus, plastid | 30.42 | 28.42 |
| GSMUA_Achr8P24510_001 | Banana | cytosol | 30.99 | 27.78 |
| Os08t0487500-01 | Rice | plastid | 17.18 | 22.51 |
| TraesCS7D01G246300.1 | Wheat | plastid | 16.62 | 21.93 |
| TraesCS6A01G288800.1 | Wheat | cytosol, plastid | 18.87 | 21.82 |
| OQU85475 | Sorghum | cytosol | 19.44 | 21.56 |
| TraesCS7A01G247700.1 | Wheat | cytosol, plastid | 16.06 | 21.19 |
| TraesCS6B01G318600.1 | Wheat | cytosol, plastid | 18.31 | 21.17 |
| EES14331 | Sorghum | plastid | 17.46 | 21.16 |
| KRH36150 | Soybean | nucleus | 19.72 | 21.02 |
| Zm00001d051736_P001 | Maize | cytosol | 19.44 | 20.91 |
| Os02t0727700-01 | Rice | cytosol, nucleus, plastid | 18.31 | 20.9 |
| TraesCS7B01G144100.1 | Wheat | plastid | 15.77 | 20.82 |
| Zm00001d031273_P001 | Maize | cytosol, plastid | 16.9 | 20.76 |
| GSMUA_Achr3P06300_001 | Banana | cytosol | 30.42 | 20.69 |
| KRG90607 | Soybean | nucleus | 19.44 | 20.47 |
| KRH36132 | Soybean | nucleus | 16.34 | 20.28 |
| KRG90622 | Soybean | nucleus | 15.77 | 18.79 |
| Zm00001d046663_P001 | Maize | cytosol | 15.77 | 18.79 |
| HORVU6Hr1G072430.1 | Barley | cytosol | 18.87 | 18.41 |
| KRH18634 | Soybean | nucleus | 12.11 | 18.22 |
| EER90075 | Sorghum | nucleus | 15.49 | 18.15 |
| KRH71659 | Soybean | nucleus | 15.77 | 18.12 |
| TraesCS7D01G387300.1 | Wheat | cytosol | 16.06 | 17.48 |
| KRH33121 | Soybean | nucleus | 15.21 | 17.48 |
| KRH18631 | Soybean | nucleus | 14.93 | 17.32 |
| TraesCS7A01G391700.1 | Wheat | cytosol | 16.06 | 17.22 |
| KRH09399 | Soybean | nucleus | 17.75 | 17.07 |
| Os02t0191500-01 | Rice | nucleus | 18.03 | 17.07 |
| OQU84547 | Sorghum | cytoskeleton, cytosol, nucleus | 18.59 | 17.05 |
| TraesCS7B01G293600.1 | Wheat | cytosol | 15.77 | 16.97 |
| KRH23103 | Soybean | nucleus | 14.65 | 16.56 |
| KRH10229 | Soybean | nucleus | 14.65 | 16.56 |
| KRH38895 | Soybean | nucleus | 17.46 | 16.49 |
| TraesCS6D01G160300.1 | Wheat | nucleus | 16.06 | 16.38 |
| Zm00001d053704_P001 | Maize | cytosol | 16.06 | 16.01 |
| KRH14643 | Soybean | nucleus | 14.65 | 15.48 |
| HORVU6Hr1G034800.1 | Barley | cytosol, nucleus | 16.06 | 15.41 |
| KRH49133 | Soybean | plastid | 13.24 | 15.31 |
| HORVU7Hr1G092570.1 | Barley | cytosol | 16.34 | 15.14 |
| KRG97316 | Soybean | nucleus | 14.65 | 15.12 |
| KRG99997 | Soybean | plastid | 13.24 | 15.06 |
| KRH24759 | Soybean | nucleus | 15.21 | 14.96 |
| KRH29763 | Soybean | nucleus | 15.21 | 14.96 |
| KRH10441 | Soybean | mitochondrion | 13.52 | 14.95 |
| KRH70139 | Soybean | nucleus | 13.24 | 14.73 |
| KRH08483 | Soybean | cytosol, nucleus, plastid | 13.24 | 14.6 |
| KRH73496 | Soybean | mitochondrion | 14.93 | 14.29 |
| KRH44018 | Soybean | mitochondrion | 12.68 | 14.2 |
| TraesCS6B01G198800.1 | Wheat | nucleus | 15.77 | 13.97 |
| KRH15082 | Soybean | nucleus | 14.37 | 13.35 |
| KRH64713 | Soybean | nucleus | 12.96 | 13.07 |
| KRH73053 | Soybean | nucleus | 14.37 | 13.04 |
| KRH30994 | Soybean | nucleus | 14.37 | 12.98 |
| KRG97885 | Soybean | mitochondrion | 12.39 | 12.32 |
| KRH40635 | Soybean | nucleus, plastid | 16.9 | 10.89 |
| KRH00522 | Soybean | plastid | 16.9 | 10.73 |
Protein Annotations
| EntrezGene:100814798 | Gene3D:3.30.40.10 | MapMan:35.1 | EMBL:ACUP02010336 | EnsemblPlantsGene:GLYMA_17G082500 | GO:GO:0000209 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0042787 | GO:GO:0043161 | GO:GO:0061630 |
| InterPro:IPR001841 | InterPro:IPR013083 | UniProt:K7MKK7 | EnsemblPlants:KRH03189 | ProteinID:KRH03189 | ProteinID:KRH03189.1 |
| PFAM:PF13639 | PFscan:PS50089 | PANTHER:PTHR44679 | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI000233E534 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr17:+:6418710..6420317
Molecular Weight (calculated)
39634.9 Da
IEP (calculated)
3.706
GRAVY (calculated)
-0.492
Length
355 amino acids
Sequence
(BLAST)
(BLAST)
001: MADVTTYLRH HPDSDPNPNP NPNPNPNPDD DQTLIPFPYW DLDFDFDPEF PSNTLSFTDR ENQVNFIMDL FHQSVEQSQL TDPLSNDAVF GAIDGIDLGF
101: PAADDFFVGQ RFSVGSDESH THPHTLAAND DGVLGFCAHS NENDDVASIP LCWDALQLEE NNNNNNTYED FEWEEVMDER DVISMLDDTV SVSLGIEEET
201: EAAAAEEDAE SEVSILEWQV LLNSTNLEGP NSEPYFGDSE DFVYTAEYEM MFGQFNDNAF NGKPPASASI VRSLPSVVVT EADVANDNNV VVVCAVCKDE
301: FGVGEGVKVL PCSHRYHGEC IVPWLGIRNT CPVCRYEFPT DDADYERRKA QRSVM
101: PAADDFFVGQ RFSVGSDESH THPHTLAAND DGVLGFCAHS NENDDVASIP LCWDALQLEE NNNNNNTYED FEWEEVMDER DVISMLDDTV SVSLGIEEET
201: EAAAAEEDAE SEVSILEWQV LLNSTNLEGP NSEPYFGDSE DFVYTAEYEM MFGQFNDNAF NGKPPASASI VRSLPSVVVT EADVANDNNV VVVCAVCKDE
301: FGVGEGVKVL PCSHRYHGEC IVPWLGIRNT CPVCRYEFPT DDADYERRKA QRSVM
001: MAEMSYLQID DANDAVFNHY RHQRRLHDHL RDQSFSQILY PLPHWIQSDD GDLYISETDF SSGDVSVSDL VFTTDDGLDL LDRRSFVMDL FHQRVEQSQV
101: TPLDNDGIDD FENYEMREDN VELDFGLEME SGNGFVDSDL VVNLNEHVDG MRLLGIESGD VIVTVESCFD SDDEDDQEKE ESEIWGIDLN EEDEYVNDDD
201: DNDDEEEDAS VTIPLCWDSL QLEDLGINNE DCEWEEVDSD DEREVLSVLA EADDNNSVSV SVAATISLED LAISERRGSS NLGWEVLLNS RSLEFNLDDA
301: ESNLELYIGD IDHEEEDYED YLHTTEYEML FEAEISSGIG KPPASKSFIK NLKVSPLSNE DVMENDDDAV CCAVCKEEMI VGKEVAELPC RHKYHSECIV
401: PWLGIRNTCP VCRFELPSD
101: TPLDNDGIDD FENYEMREDN VELDFGLEME SGNGFVDSDL VVNLNEHVDG MRLLGIESGD VIVTVESCFD SDDEDDQEKE ESEIWGIDLN EEDEYVNDDD
201: DNDDEEEDAS VTIPLCWDSL QLEDLGINNE DCEWEEVDSD DEREVLSVLA EADDNNSVSV SVAATISLED LAISERRGSS NLGWEVLLNS RSLEFNLDDA
301: ESNLELYIGD IDHEEEDYED YLHTTEYEML FEAEISSGIG KPPASKSFIK NLKVSPLSNE DVMENDDDAV CCAVCKEEMI VGKEVAELPC RHKYHSECIV
401: PWLGIRNTCP VCRFELPSD
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FJH4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.