Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH14643 | Soybean | nucleus | 70.26 | 63.99 |
| KRH18634 | Soybean | nucleus | 45.75 | 59.32 |
| KRH73496 | Soybean | mitochondrion | 67.65 | 55.8 |
| EER92269 | Sorghum | nucleus | 46.73 | 50.18 |
| Os03t0351800-01 | Rice | nucleus | 46.08 | 49.82 |
| Zm00001d047476_P001 | Maize | mitochondrion | 46.73 | 48.97 |
| GSMUA_Achr8P09890_001 | Banana | nucleus | 36.93 | 48.92 |
| TraesCS3D01G432800.1 | Wheat | mitochondrion | 46.08 | 48.79 |
| TraesCS3B01G474100.1 | Wheat | mitochondrion | 45.75 | 48.61 |
| TraesCS3A01G440000.1 | Wheat | mitochondrion | 45.75 | 48.44 |
| HORVU3Hr1G096110.1 | Barley | mitochondrion | 45.75 | 48.44 |
| KRH71659 | Soybean | nucleus | 47.71 | 47.25 |
| KRH33121 | Soybean | nucleus | 46.73 | 46.28 |
| GSMUA_AchrUn_... | Banana | cytosol, mitochondrion, nucleus, plastid | 38.24 | 45.17 |
| Bra004589.1-P | Field mustard | nucleus | 34.64 | 43.44 |
| CDY22483 | Canola | mitochondrion | 42.48 | 42.9 |
| AT2G40830.4 | Thale cress | mitochondrion | 45.42 | 42.38 |
| CDY35437 | Canola | mitochondrion, nucleus | 43.79 | 42.27 |
| Bra000207.1-P | Field mustard | mitochondrion, nucleus | 43.79 | 42.27 |
| Bra007253.1-P | Field mustard | mitochondrion, nucleus | 42.16 | 41.61 |
| CDY23878 | Canola | mitochondrion, nucleus | 41.18 | 41.31 |
| AT3G56580.1 | Thale cress | mitochondrion | 43.14 | 41.25 |
| CDX79968 | Canola | mitochondrion, nucleus | 39.87 | 41.08 |
| CDY27204 | Canola | mitochondrion, nucleus | 41.83 | 41.03 |
| CDX72127 | Canola | mitochondrion | 42.16 | 40.82 |
| Bra014684.1-P | Field mustard | nucleus | 25.49 | 40.62 |
| CDX75998 | Canola | nucleus | 25.49 | 40.62 |
| GSMUA_AchrUn_... | Banana | nucleus | 33.33 | 39.53 |
| GSMUA_Achr11P... | Banana | mitochondrion | 37.91 | 38.8 |
| CDX94901 | Canola | cytosol | 37.25 | 36.31 |
| KRH36132 | Soybean | nucleus | 25.82 | 27.62 |
| KRG90622 | Soybean | nucleus | 26.8 | 27.52 |
| KRH10229 | Soybean | nucleus | 26.47 | 25.8 |
| KRH23103 | Soybean | nucleus | 26.47 | 25.8 |
| KRH09399 | Soybean | nucleus | 30.39 | 25.2 |
| KRH64713 | Soybean | nucleus | 28.43 | 24.72 |
| KRH38895 | Soybean | nucleus | 30.07 | 24.47 |
| KRG99997 | Soybean | plastid | 24.84 | 24.36 |
| KRG97316 | Soybean | nucleus | 27.12 | 24.13 |
| KRH49133 | Soybean | plastid | 23.86 | 23.78 |
| KRH10441 | Soybean | mitochondrion | 24.84 | 23.68 |
| KRH44018 | Soybean | mitochondrion | 24.51 | 23.66 |
| KRH30994 | Soybean | nucleus | 30.07 | 23.41 |
| KRH29763 | Soybean | nucleus | 27.12 | 22.99 |
| KRH24759 | Soybean | nucleus | 26.8 | 22.71 |
| KRG97885 | Soybean | mitochondrion | 26.47 | 22.69 |
| KRH70139 | Soybean | nucleus | 22.22 | 21.32 |
| KRH08483 | Soybean | cytosol, nucleus, plastid | 21.24 | 20.19 |
| KRG90607 | Soybean | nucleus | 21.9 | 19.88 |
| KRH36150 | Soybean | nucleus | 21.57 | 19.82 |
| KRH73053 | Soybean | nucleus | 24.18 | 18.93 |
| KRH15082 | Soybean | nucleus | 23.2 | 18.59 |
| KRH56750 | Soybean | cytosol | 17.65 | 15.79 |
| KRH03189 | Soybean | nucleus | 17.32 | 14.93 |
| KRH18313 | Soybean | nucleus | 16.67 | 13.64 |
| KRG93748 | Soybean | nucleus, plastid | 16.67 | 13.42 |
| KRH40635 | Soybean | nucleus, plastid | 21.57 | 11.98 |
| KRH00522 | Soybean | plastid | 21.57 | 11.81 |
Protein Annotations
| EntrezGene:100819514 | Gene3D:3.30.40.10 | MapMan:35.1 | EMBL:ACUP02008109 | EnsemblPlantsGene:GLYMA_13G072800 | GO:GO:0000209 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0042787 | GO:GO:0043161 | GO:GO:0061630 |
| UniProt:I1LWC4 | InterPro:IPR001841 | InterPro:IPR013083 | ProteinID:KRH18630.1 | EnsemblPlants:KRH18631 | ProteinID:KRH18631 |
| ProteinID:KRH18631.1 | PFAM:PF13639 | PFAM:PF14369 | PFscan:PS50089 | PANTHER:PTHR44290 | PANTHER:PTHR44290:SF5 |
| SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0001E24568 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg |
Description
hypothetical protein
Coordinates
chr13:-:17431031..17434029
Molecular Weight (calculated)
34365.4 Da
IEP (calculated)
8.423
GRAVY (calculated)
-0.672
Length
306 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSGTTYWCY TCRQPIWLEG REAICPYCDG GFVQELNELR GVARQHGFSS RMEDAHQMPD IMDAVRAVME QRGSEPRIRV RDAVDNFMRQ RMAGRYTNFD
101: VRRRSGSGSG SGSILIPDET WGVFSSGPYL IFHGQAPGFT NSNGSSRGGP RRVDFGDYFL GPRLEGLIEQ HISNDRLGPP PASHSSIDAM PTIKITHEHL
201: QSDSHCPVCK ERFELGSEAR KMPCNHVYHS DCIVPWLVLH NSCPVCRVEL PPKEHTSSRG RRIWGNGSGS GSSNDISRGR ENRQMNNGRR NLLSYLWPFR
301: TSSSST
101: VRRRSGSGSG SGSILIPDET WGVFSSGPYL IFHGQAPGFT NSNGSSRGGP RRVDFGDYFL GPRLEGLIEQ HISNDRLGPP PASHSSIDAM PTIKITHEHL
201: QSDSHCPVCK ERFELGSEAR KMPCNHVYHS DCIVPWLVLH NSCPVCRVEL PPKEHTSSRG RRIWGNGSGS GSSNDISRGR ENRQMNNGRR NLLSYLWPFR
301: TSSSST
001: MSSSRNTHWC HRCQRAVRLH GQEPVCFYCG GGFVEELDMA QASPFDMFRS HRGVVERDQT FDLMDAFSVF MRNRLAERSH DREIRGRTIS SGPENFPGLA
101: PLLIFGGQVP YRLTGDNAVE ALFNGGSPGI GITRGNTGDY FFGPGLEELF EQLSAGTTRR GPPPAPRSAI DALPTIKIAQ RHLRSSDSNC PVCKDEFELG
201: SEAKQMPCNH IYHSDCIVPW LVQHNSCPVC RQELPSASGP SSSQNRTTPT RNYRSSSSSS SSNSRENGNE RRNPFSSFWP FRSSGSSSSS TQNRGGTRNS
301: DTSDENHNYH QQQHQQSYMG YSGWPFDY
101: PLLIFGGQVP YRLTGDNAVE ALFNGGSPGI GITRGNTGDY FFGPGLEELF EQLSAGTTRR GPPPAPRSAI DALPTIKIAQ RHLRSSDSNC PVCKDEFELG
201: SEAKQMPCNH IYHSDCIVPW LVQHNSCPVC RQELPSASGP SSSQNRTTPT RNYRSSSSSS SSNSRENGNE RRNPFSSFWP FRSSGSSSSS TQNRGGTRNS
301: DTSDENHNYH QQQHQQSYMG YSGWPFDY
Arabidopsis Description
RHC1AProbable E3 ubiquitin-protein ligase RHC1A [Source:UniProtKB/Swiss-Prot;Acc:O22197]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.