Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 4
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX79968 | Canola | mitochondrion, nucleus | 87.54 | 89.9 |
| Bra004589.1-P | Field mustard | nucleus | 71.48 | 89.34 |
| CDY35437 | Canola | mitochondrion, nucleus | 82.95 | 79.81 |
| CDY22483 | Canola | mitochondrion | 79.02 | 79.54 |
| AT2G40830.4 | Thale cress | mitochondrion | 83.93 | 78.05 |
| CDY27204 | Canola | mitochondrion, nucleus | 62.95 | 61.54 |
| CDX72127 | Canola | mitochondrion | 63.28 | 61.08 |
| CDX75998 | Canola | nucleus | 38.03 | 60.42 |
| KRH33121 | Soybean | nucleus | 54.1 | 53.4 |
| KRH71659 | Soybean | nucleus | 53.77 | 53.07 |
| VIT_08s0040g00590.t01 | Wine grape | nucleus | 52.79 | 51.27 |
| CDX94901 | Canola | cytosol | 52.46 | 50.96 |
| GSMUA_AchrUn_... | Banana | nucleus | 40.98 | 48.45 |
| GSMUA_Achr8P09890_001 | Banana | nucleus | 35.08 | 46.32 |
| VIT_06s0009g02350.t01 | Wine grape | mitochondrion | 50.82 | 46.13 |
| Os03t0351800-01 | Rice | nucleus | 42.62 | 45.94 |
| EER92269 | Sorghum | nucleus | 42.3 | 45.26 |
| KRH14643 | Soybean | nucleus | 49.84 | 45.24 |
| GSMUA_AchrUn_... | Banana | cytosol, mitochondrion, nucleus, plastid | 38.36 | 45.17 |
| Zm00001d047476_P001 | Maize | mitochondrion | 41.97 | 43.84 |
| HORVU3Hr1G096110.1 | Barley | mitochondrion | 41.31 | 43.6 |
| PGSC0003DMT400058464 | Potato | nucleus | 45.25 | 43.4 |
| Solyc01g009000.2.1 | Tomato | plastid | 45.25 | 43.4 |
| TraesCS3D01G432800.1 | Wheat | mitochondrion | 40.98 | 43.25 |
| TraesCS3A01G440000.1 | Wheat | mitochondrion | 40.98 | 43.25 |
| TraesCS3B01G474100.1 | Wheat | mitochondrion | 40.66 | 43.06 |
| KRH18631 | Soybean | nucleus | 41.31 | 41.18 |
| PGSC0003DMT400079301 | Potato | nucleus | 39.34 | 40.0 |
| Solyc08g075910.1.1 | Tomato | nucleus | 39.02 | 39.53 |
| KRH73496 | Soybean | mitochondrion | 45.9 | 37.74 |
| GSMUA_Achr11P... | Banana | mitochondrion | 35.74 | 36.45 |
| KRH18634 | Soybean | nucleus | 27.54 | 35.59 |
| CDX82271 | Canola | cytosol | 23.28 | 33.33 |
| CDY36069 | Canola | cytosol | 23.61 | 33.18 |
| CDY72364 | Canola | cytosol | 23.93 | 32.88 |
| CDY46577 | Canola | nucleus | 28.2 | 29.55 |
| CDY33437 | Canola | cytosol | 29.84 | 28.09 |
| CDY24592 | Canola | nucleus | 29.51 | 28.04 |
| CDY22790 | Canola | nucleus | 24.59 | 27.78 |
| CDX74533 | Canola | cytosol | 26.23 | 27.4 |
| CDY25360 | Canola | cytosol, nucleus, plastid | 28.85 | 27.24 |
| CDY26096 | Canola | nucleus | 25.9 | 26.87 |
| CDX92768 | Canola | nucleus | 26.23 | 25.89 |
| CDY10554 | Canola | cytosol | 25.57 | 25.57 |
| CDY01669 | Canola | plastid | 26.56 | 25.08 |
| CDY32791 | Canola | nucleus | 28.85 | 25.0 |
| CDY08249 | Canola | cytosol | 27.21 | 24.78 |
| CDX92770 | Canola | nucleus | 26.23 | 24.69 |
| CDY42507 | Canola | cytosol | 27.21 | 24.48 |
| CDY42740 | Canola | nucleus | 25.57 | 24.22 |
| CDY56022 | Canola | nucleus | 24.59 | 23.96 |
| CDX89343 | Canola | cytosol, mitochondrion | 27.21 | 23.58 |
| CDY50031 | Canola | cytosol | 22.3 | 23.45 |
| CDY56081 | Canola | nucleus | 18.36 | 23.43 |
| CDX94665 | Canola | nucleus | 18.03 | 23.4 |
| CDY43991 | Canola | nucleus | 23.61 | 23.3 |
| CDY56080 | Canola | cytosol | 21.64 | 23.24 |
| CDY53450 | Canola | cytosol | 24.26 | 22.98 |
| CDX80258 | Canola | plastid | 26.56 | 22.82 |
| CDY68603 | Canola | cytosol | 18.03 | 22.73 |
| CDY32333 | Canola | cytosol | 17.38 | 22.55 |
| CDY61251 | Canola | cytosol | 26.23 | 22.16 |
| CDY20473 | Canola | nucleus, plastid | 24.26 | 22.16 |
| CDX74839 | Canola | cytosol, plastid | 23.28 | 21.91 |
| CDX99105 | Canola | cytosol, plastid | 22.95 | 21.6 |
| CDX94342 | Canola | mitochondrion, nucleus | 27.21 | 21.45 |
| CDY48679 | Canola | cytosol, plastid | 23.28 | 21.26 |
| CDX81263 | Canola | cytosol, peroxisome, plastid | 20.0 | 21.03 |
| CDY24951 | Canola | nucleus | 25.57 | 20.8 |
| CDY18690 | Canola | cytosol, peroxisome, plastid | 20.33 | 20.74 |
| CDY28208 | Canola | cytosol | 15.74 | 20.69 |
| CDY07641 | Canola | nucleus | 25.25 | 20.59 |
| CDY33046 | Canola | plastid | 22.95 | 20.47 |
| CDX88709 | Canola | cytosol, plastid | 25.25 | 19.54 |
| CDY01221 | Canola | cytosol | 12.13 | 16.97 |
| CDY69134 | Canola | cytosol | 15.74 | 16.49 |
| CDY58938 | Canola | nucleus | 23.28 | 16.1 |
| CDY21513 | Canola | cytosol | 18.69 | 16.01 |
| CDX78323 | Canola | cytosol | 15.08 | 15.97 |
| CDY03622 | Canola | nucleus | 23.28 | 15.92 |
| CDX69973 | Canola | cytosol | 18.69 | 15.83 |
| CDY02194 | Canola | peroxisome | 18.36 | 14.07 |
| CDY51628 | Canola | peroxisome | 18.69 | 14.04 |
| CDX69496 | Canola | cytosol | 12.79 | 13.54 |
| CDY11934 | Canola | nucleus | 28.2 | 13.19 |
| CDX90972 | Canola | cytosol | 14.43 | 13.13 |
| CDX85531 | Canola | cytosol | 14.43 | 12.83 |
| CDY26465 | Canola | cytosol | 13.77 | 12.39 |
| CDY34721 | Canola | cytosol | 15.41 | 12.05 |
| CDY34722 | Canola | cytosol | 15.41 | 12.05 |
| CDY23599 | Canola | golgi, mitochondrion | 23.28 | 11.66 |
Protein Annotations
| EnsemblPlants:CDY23878 | EnsemblPlantsGene:GSBRNA2T00024312001 | Gene3D:3.30.40.10 | GO:A0A078GGV6 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR44290 | PANTHER:PTHR44290:SF1 | PFAM:PF13639 | PFAM:PF14369 |
| PFscan:PS50089 | ProteinID:CDY23878 | ProteinID:CDY23878.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 |
| UniParc:UPI0004EE5811 | UniProt:A0A078GGV6 | MapMan:35.1 | : | : | : |
Description
BnaC04g01590DBnaC04g01590D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GGV6]
Coordinates
chrLK032150:-:452722..454664
Molecular Weight (calculated)
33924.9 Da
IEP (calculated)
7.301
GRAVY (calculated)
-0.847
Length
305 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSGRNTHWC HRCQRAVRLH GPDPVCSYCG GGFVEELDTP QALAANPFDI FRSHRDVDPA FDLMDAFSAF MRNRLADREL RGRSITSRPE SFPGLAPLDN
101: AVEALFSNGS PGISITRGNT GDYFFGPGLE ELFEQLSTGG STRRGPPPAP RSSIDALPTV KIAQRHLRSS DSNCPVCKEE FELGAEAKQM PCNHVYHSDC
201: IVPWLVQHNS CPVCRQELPS GASSSENRST TTRRNYRSSS NSNERRSPFS SLWPFRSSGS SSNNNTQNRG GTRNSDATDE NHNYHHQQQQ QQQQSHMGYS
301: GWPFD
101: AVEALFSNGS PGISITRGNT GDYFFGPGLE ELFEQLSTGG STRRGPPPAP RSSIDALPTV KIAQRHLRSS DSNCPVCKEE FELGAEAKQM PCNHVYHSDC
201: IVPWLVQHNS CPVCRQELPS GASSSENRST TTRRNYRSSS NSNERRSPFS SLWPFRSSGS SSNNNTQNRG GTRNSDATDE NHNYHHQQQQ QQQQSHMGYS
301: GWPFD
001: MSSSRNTHWC HRCQRAVRLH GQEPVCFYCG GGFVEELDMA QASPFDMFRS HRGVVERDQT FDLMDAFSVF MRNRLAERSH DREIRGRTIS SGPENFPGLA
101: PLLIFGGQVP YRLTGDNAVE ALFNGGSPGI GITRGNTGDY FFGPGLEELF EQLSAGTTRR GPPPAPRSAI DALPTIKIAQ RHLRSSDSNC PVCKDEFELG
201: SEAKQMPCNH IYHSDCIVPW LVQHNSCPVC RQELPSASGP SSSQNRTTPT RNYRSSSSSS SSNSRENGNE RRNPFSSFWP FRSSGSSSSS TQNRGGTRNS
301: DTSDENHNYH QQQHQQSYMG YSGWPFDY
101: PLLIFGGQVP YRLTGDNAVE ALFNGGSPGI GITRGNTGDY FFGPGLEELF EQLSAGTTRR GPPPAPRSAI DALPTIKIAQ RHLRSSDSNC PVCKDEFELG
201: SEAKQMPCNH IYHSDCIVPW LVQHNSCPVC RQELPSASGP SSSQNRTTPT RNYRSSSSSS SSNSRENGNE RRNPFSSFWP FRSSGSSSSS TQNRGGTRNS
301: DTSDENHNYH QQQHQQSYMG YSGWPFDY
Arabidopsis Description
RHC1AProbable E3 ubiquitin-protein ligase RHC1A [Source:UniProtKB/Swiss-Prot;Acc:O22197]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.