Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY58938 | Canola | nucleus | 95.29 | 96.37 |
| AT5G01980.1 | Thale cress | nucleus | 76.68 | 69.37 |
| CDY01221 | Canola | cytosol | 32.29 | 66.06 |
| KRH00522 | Soybean | plastid | 47.31 | 37.75 |
| KRH40635 | Soybean | nucleus, plastid | 46.19 | 37.39 |
| VIT_08s0056g00320.t01 | Wine grape | mitochondrion | 47.09 | 35.59 |
| PGSC0003DMT400071362 | Potato | nucleus | 37.44 | 35.31 |
| GSMUA_Achr4P02460_001 | Banana | nucleus | 30.72 | 33.09 |
| CDX82271 | Canola | cytosol | 14.57 | 30.52 |
| TraesCS5D01G146400.1 | Wheat | nucleus | 34.53 | 30.32 |
| TraesCS5A01G145800.1 | Wheat | nucleus | 34.3 | 30.0 |
| CDY36069 | Canola | cytosol | 14.57 | 29.95 |
| Os11t0119200-01 | Rice | nucleus | 32.74 | 29.74 |
| CDY72364 | Canola | cytosol | 14.8 | 29.73 |
| TraesCS5B01G144700.1 | Wheat | nucleus | 33.86 | 29.61 |
| Os12t0118700-01 | Rice | nucleus | 32.06 | 28.66 |
| CDX75998 | Canola | nucleus | 10.99 | 25.52 |
| CDY32333 | Canola | cytosol | 12.78 | 24.26 |
| CDX94665 | Canola | nucleus | 12.78 | 24.26 |
| CDY22790 | Canola | nucleus | 14.57 | 24.07 |
| CDY68603 | Canola | cytosol | 13.0 | 23.97 |
| CDY22483 | Canola | mitochondrion | 16.14 | 23.76 |
| CDY33437 | Canola | cytosol | 17.04 | 23.46 |
| CDY24592 | Canola | nucleus | 16.82 | 23.36 |
| CDY35437 | Canola | mitochondrion, nucleus | 16.59 | 23.34 |
| CDY23878 | Canola | mitochondrion, nucleus | 15.92 | 23.28 |
| CDX79968 | Canola | mitochondrion, nucleus | 15.47 | 23.23 |
| CDY25360 | Canola | cytosol, nucleus, plastid | 16.82 | 23.22 |
| CDY27204 | Canola | mitochondrion, nucleus | 15.92 | 22.76 |
| CDX72127 | Canola | mitochondrion | 15.92 | 22.47 |
| CDY46577 | Canola | nucleus | 14.57 | 22.34 |
| CDY20473 | Canola | nucleus, plastid | 16.37 | 21.86 |
| CDY26096 | Canola | nucleus | 14.35 | 21.77 |
| CDY56081 | Canola | nucleus | 11.66 | 21.76 |
| CDX81263 | Canola | cytosol, peroxisome, plastid | 14.13 | 21.72 |
| GSMUA_Achr11P... | Banana | cytosol | 34.98 | 21.52 |
| CDY18690 | Canola | cytosol, peroxisome, plastid | 14.35 | 21.4 |
| CDY50031 | Canola | cytosol | 13.9 | 21.38 |
| CDX92768 | Canola | nucleus | 14.8 | 21.36 |
| CDX94901 | Canola | cytosol | 15.02 | 21.34 |
| CDY10554 | Canola | cytosol | 14.57 | 21.31 |
| CDY56080 | Canola | cytosol | 13.45 | 21.13 |
| CDY61251 | Canola | cytosol | 17.04 | 21.05 |
| CDY32791 | Canola | nucleus | 16.59 | 21.02 |
| CDX74839 | Canola | cytosol, plastid | 15.25 | 20.99 |
| CDY42507 | Canola | cytosol | 15.92 | 20.94 |
| CDX80258 | Canola | plastid | 16.37 | 20.56 |
| CDY24951 | Canola | nucleus | 17.26 | 20.53 |
| CDY42740 | Canola | nucleus | 14.8 | 20.5 |
| CDX92770 | Canola | nucleus | 14.8 | 20.37 |
| CDY07641 | Canola | nucleus | 17.04 | 20.32 |
| CDX88709 | Canola | cytosol, plastid | 17.94 | 20.3 |
| CDY53450 | Canola | cytosol | 14.57 | 20.19 |
| CDY08249 | Canola | cytosol | 15.02 | 20.0 |
| CDX74533 | Canola | cytosol | 13.0 | 19.86 |
| CDY56022 | Canola | nucleus | 13.9 | 19.81 |
| CDX78323 | Canola | cytosol | 12.78 | 19.79 |
| CDX99105 | Canola | cytosol, plastid | 14.35 | 19.75 |
| CDY69134 | Canola | cytosol | 12.56 | 19.24 |
| CDY48679 | Canola | cytosol, plastid | 14.13 | 18.86 |
| CDY33046 | Canola | plastid | 14.35 | 18.71 |
| CDY43991 | Canola | nucleus | 12.78 | 18.45 |
| CDY01669 | Canola | plastid | 13.23 | 18.27 |
| CDY28208 | Canola | cytosol | 9.42 | 18.1 |
| CDX94342 | Canola | mitochondrion, nucleus | 15.47 | 17.83 |
| CDX89343 | Canola | cytosol, mitochondrion | 13.9 | 17.61 |
| CDX69973 | Canola | cytosol | 13.45 | 16.67 |
| CDY21513 | Canola | cytosol | 13.23 | 16.57 |
| CDY34722 | Canola | cytosol | 13.68 | 15.64 |
| CDX85531 | Canola | cytosol | 11.88 | 15.45 |
| CDY34721 | Canola | cytosol | 13.45 | 15.38 |
| CDX69496 | Canola | cytosol | 9.87 | 15.28 |
| CDX90972 | Canola | cytosol | 11.44 | 15.22 |
| CDY02194 | Canola | peroxisome | 13.23 | 14.82 |
| CDY51628 | Canola | peroxisome | 13.23 | 14.53 |
| CDY26465 | Canola | cytosol | 10.31 | 13.57 |
| CDY11934 | Canola | nucleus | 16.14 | 11.04 |
| CDY23599 | Canola | golgi, mitochondrion | 12.56 | 9.2 |
Protein Annotations
| EnsemblPlants:CDY03622 | EnsemblPlantsGene:GSBRNA2T00116384001 | Gene3D:3.30.40.10 | GO:A0A078ERF8 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR44679 | PFAM:PF13639 | PFscan:PS50089 | ProteinID:CDY03622 |
| ProteinID:CDY03622.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | TMHMM:TMhelix | UniParc:UPI0004EF0819 |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaC03g68810D
Coordinates
chrLK031944:-:1010348..1011904
Molecular Weight (calculated)
50376.9 Da
IEP (calculated)
4.668
GRAVY (calculated)
-0.741
Length
446 amino acids
Sequence
(BLAST)
(BLAST)
001: MESQDDVTNQ TPSPSCNLCG RLIPQSTTAP DDLEIFSLCG DCKFLLLQDF GTTPPPLTRR QTSRRRRMRM RRRRSSSSRQ GSSSESVADQ QQQQFTHLIS
101: IARQSLQGNE TSSHATPDGS ARWRVLSESE SEDLDNLSNA SFSLYRFSSL GSAYGGESDA ASTDIEFDTD IDPMHAGLNQ WNSDDEDREW EEEGARHSRT
201: PSESNSSVTR FDSLDLERTF RQRIIERRQA LSRNIFTGLE DLEFSRYPGN VADYLDERGF EELLEQLADS DNSRRGAPPA SMSCVRNLPR VIIREEGLDC
301: AVCKEVFSLG NETTQLPCLH LYHPHCIVPW LSARNSCPLC RYELPTDDKD YEDRKQNVVD VVSEDSSSDD DGTEGGEEED HDVVRGESEA GVRSVSRGRW
401: LFLAAAPVVS LVGVVLAMWL SNPQRRNIVF SHSQRGNRSR RWLPFF
101: IARQSLQGNE TSSHATPDGS ARWRVLSESE SEDLDNLSNA SFSLYRFSSL GSAYGGESDA ASTDIEFDTD IDPMHAGLNQ WNSDDEDREW EEEGARHSRT
201: PSESNSSVTR FDSLDLERTF RQRIIERRQA LSRNIFTGLE DLEFSRYPGN VADYLDERGF EELLEQLADS DNSRRGAPPA SMSCVRNLPR VIIREEGLDC
301: AVCKEVFSLG NETTQLPCLH LYHPHCIVPW LSARNSCPLC RYELPTDDKD YEDRKQNVVD VVSEDSSSDD DGTEGGEEED HDVVRGESEA GVRSVSRGRW
401: LFLAAAPVVS LVGVVLAMWL SNPQRRNIVF SHSQRGNRSR RWLPFF
001: MESQGPSNGH PMDISSNSIP SSACNLCGRV VQSASDDLEI FSLCVDCKFL LLEDFGTPAP PLARRQTIRR RRMRRRRRTT RHDSSESVGV GDLSSQQFTH
101: LISIARQSLS TVQASEDLRD DLRTSSHTTP SGSTRWRLFS ESESDDFDNF GETESNASFS LYRFPHADND TISFSAYGGE SDASTDRHAD IFVQPDDRSD
201: IDFDTDIDPM RAGLNQWNSD EEDREWEEGA GPSGVAGTRY RNYLASPSES YSSMTRFDSP ELERSFRQRI IERRHSLSRN IFTGLEDLDF SPYAANVGDY
301: LDERGFDELL EQLAESDNSR RGAPPASVSC VRNLPRVIIA EEHVMKGLVC AICKELFSLR NETTQLPCLH LYHAHCIVPW LSARNSCPLC RYELPTDDKD
401: YEEGKRNVLD VSEDSSSSDD GTESGEEEYV ERGESESGVS RVSRGRWLFL AAAPVVSLVG VVLAMWLSSP HRRGIAISHS QRENRTRRWL PFF
101: LISIARQSLS TVQASEDLRD DLRTSSHTTP SGSTRWRLFS ESESDDFDNF GETESNASFS LYRFPHADND TISFSAYGGE SDASTDRHAD IFVQPDDRSD
201: IDFDTDIDPM RAGLNQWNSD EEDREWEEGA GPSGVAGTRY RNYLASPSES YSSMTRFDSP ELERSFRQRI IERRHSLSRN IFTGLEDLDF SPYAANVGDY
301: LDERGFDELL EQLAESDNSR RGAPPASVSC VRNLPRVIIA EEHVMKGLVC AICKELFSLR NETTQLPCLH LYHAHCIVPW LSARNSCPLC RYELPTDDKD
401: YEEGKRNVLD VSEDSSSSDD GTESGEEEYV ERGESESGVS RVSRGRWLFL AAAPVVSLVG VVLAMWLSSP HRRGIAISHS QRENRTRRWL PFF
Arabidopsis Description
At5g01980 [Source:UniProtKB/TrEMBL;Acc:Q9LZN3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.