CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

nucleus 1
peroxisome 1
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plastid
Any Predictor:	cytosol, nucleus, peroxisome, plastid
BaCelLo:	nucleus
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX90616
CDY12145
CDY29066
CDY52540

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G64920.1	CDY12145	AT2G32950.1	10488108
AT5G64920.1	CDY52540	AT2G32950.1	10488108
AT5G64920.1	CDY12145	AT2G32950.1	12028569
AT5G64920.1	CDY52540	AT2G32950.1	12028569
AT5G64920.1	CDY12145	AT2G32950.1	12827204
AT5G64920.1	CDY52540	AT2G32950.1	12827204
AT5G64920.1	CDX90616	AT3G52155.1	21798944
AT5G64920.1	CDY29066	AT3G52155.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY18690	Canola	cytosol, peroxisome, plastid	95.52	92.64
AT5G64920.1	Thale cress	cytosol	81.72	70.96
CDY32333	Canola	cytosol	37.93	46.81
KRG90607	Soybean	nucleus	52.41	45.1
KRH36150	Soybean	nucleus	51.03	44.44
CDX94665	Canola	nucleus	35.17	43.4
CDY68603	Canola	cytosol	35.86	42.98
VIT_18s0001g14530.t01	Wine grape	cytosol, nucleus, plastid	46.9	40.72
PGSC0003DMT400081469	Potato	nucleus	51.38	39.42
Solyc09g074460.1.1	Tomato	nucleus	51.03	39.26
CDY36069	Canola	cytosol	20.0	26.73
CDX82271	Canola	cytosol	19.31	26.29
CDY72364	Canola	cytosol	19.31	25.23
CDY22790	Canola	nucleus	23.45	25.19
CDY43991	Canola	nucleus	25.86	24.27
CDY26096	Canola	nucleus	23.79	23.47
CDY56081	Canola	nucleus	18.62	22.59
CDY24592	Canola	nucleus	24.48	22.12
CDY50031	Canola	cytosol	22.07	22.07
CDY25360	Canola	cytosol, nucleus, plastid	24.48	21.98
CDY10554	Canola	cytosol	23.1	21.97
CDY33437	Canola	cytosol	24.48	21.91
CDX75998	Canola	nucleus	14.48	21.88
CDY56080	Canola	cytosol	21.03	21.48
CDY56022	Canola	nucleus	23.1	21.41
CDY46577	Canola	nucleus	21.38	21.31
CDY22483	Canola	mitochondrion	22.07	21.12
CDY08249	Canola	cytosol	24.14	20.9
CDY28208	Canola	cytosol	16.55	20.69
CDX99105	Canola	cytosol, plastid	22.76	20.37
CDY23878	Canola	mitochondrion, nucleus	21.03	20.0
CDY35437	Canola	mitochondrion, nucleus	21.72	19.87
CDY42507	Canola	cytosol	23.1	19.76
CDY61251	Canola	cytosol	24.48	19.67
CDY69134	Canola	cytosol	19.66	19.59
CDX74533	Canola	cytosol	19.66	19.52
CDY20473	Canola	nucleus, plastid	22.41	19.46
CDX74839	Canola	cytosol, plastid	21.38	19.14
CDX92768	Canola	nucleus	20.34	19.09
CDY32791	Canola	nucleus	23.1	19.03
CDX79968	Canola	mitochondrion, nucleus	19.31	18.86
CDX72127	Canola	mitochondrion	20.34	18.67
CDX78323	Canola	cytosol	18.28	18.4
CDY53450	Canola	cytosol	20.34	18.32
CDX80258	Canola	plastid	22.41	18.31
CDY27204	Canola	mitochondrion, nucleus	19.66	18.27
CDX92770	Canola	nucleus	20.34	18.21
CDX88709	Canola	cytosol, plastid	24.48	18.02
CDY42740	Canola	nucleus	20.0	18.01
CDY01669	Canola	plastid	20.0	17.96
CDY24951	Canola	nucleus	23.1	17.87
CDY07641	Canola	nucleus	22.76	17.65
CDX89343	Canola	cytosol, mitochondrion	21.38	17.61
CDY33046	Canola	plastid	20.69	17.54
CDY34722	Canola	cytosol	23.1	17.18
CDX94342	Canola	mitochondrion, nucleus	22.76	17.05
CDY48679	Canola	cytosol, plastid	19.31	16.77
CDY34721	Canola	cytosol	22.41	16.67
CDY21513	Canola	cytosol	20.34	16.57
CDY26465	Canola	cytosol	19.31	16.52
CDX69973	Canola	cytosol	20.34	16.39
CDX90972	Canola	cytosol	18.62	16.12
CDX85531	Canola	cytosol	18.28	15.45
CDY02194	Canola	peroxisome	21.03	15.33
CDX69496	Canola	cytosol	15.17	15.28
CDY51628	Canola	peroxisome	21.38	15.27
CDX94901	Canola	cytosol	15.86	14.65
CDY58938	Canola	nucleus	22.07	14.51
CDY01221	Canola	cytosol	10.69	14.22
CDY03622	Canola	nucleus	21.72	14.13
CDY23599	Canola	golgi, mitochondrion	25.86	12.32
CDY11934	Canola	nucleus	24.14	10.74

Protein Annotations

EnsemblPlants:CDX81263	EnsemblPlantsGene:GSBRNA2T00134761001	Gene3D:3.30.40.10	GO:A0A078D1N6	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR44679	PFAM:PF13639	PFAM:PF14369
PFscan:PS50089	ProteinID:CDX81263	ProteinID:CDX81263.1	SEG:seg	SMART:SM00184	SUPFAM:SSF57850
UniParc:UPI0004EE677D	MapMan:35.1	:	:	:	:

Description

BnaC09g06740D

Coordinates

chrLK031824:-:519362..520234

Molecular Weight (calculated)

32137.3 Da

IEP (calculated)

4.173

GRAVY (calculated)

-0.490

Length

290 amino acids

Sequence
(BLAST)

001: MSSAPSDDAH WCYHCNKRVV VETVDDFVVC SECNKGFVES IDPIPRSPPL SPDLRVEDSS IGSHFLQMLR LLTHAPSPPR LDVLSYEDEF FGLEINSRNE
101: IEDEEDEEEE EEEDRGGEMF PITTRSITGR NRILDWAEIL MGIEDNSDRY AVNAADYVDD GAGYEALLQN LAEGDGGGRR GAPPAAKSAI EALETLEVGD
201: SCDKMMMVVV CAVCKDAMVI GETVKKLPCG HCYHGNCILP WLGTRNSCPV CRFQLKTDDA EYEEEEERKK RTTTTTLTDS GASSSSSSRF

Best Arabidopsis Sequence Match ( AT5G64920.1 )
(BLAST)

001: MSDAPSSSPD ATASHWCYHC NKRVVVETLD DFVVCCECNK GFVESIQPTP AAYSSPAPPQ PLSPDLNVED SSIGSHFLQM LRLLAHAPSQ RSPPRHLDVL
101: SYEDDFFRLE LNSRNEIDDD EDEDEDDGDE EEEDEEENLT VNDEEDEEDD LRRRNRFPLT TTQSRTGRNR ILDWAEILMG IEDNSIEFRM ESDRYAGNPA
201: DYIDDAAGYE ALLQNLAEGD GGGGGGRRGA PPAAKSAIEA LETFEVSSSE GEMVMVCAVC KDGMVMGETG KKLPCGHCYH GDCIVPWLGT RNSCPVCRFQ
301: LETDDAEYEE ERKKRTSTVS DSAAASSSSS TSRY

Arabidopsis Description

CIP8CIP8 [Source:UniProtKB/TrEMBL;Acc:A0A178UJC6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.