Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra027436.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| AT3G13430.2 | Thale cress | nucleus | 72.82 | 71.43 |
| CDY46577 | Canola | nucleus | 46.28 | 49.14 |
| CDY23599 | Canola | golgi, mitochondrion | 95.79 | 48.6 |
| CDY10554 | Canola | cytosol | 46.6 | 47.21 |
| CDY08249 | Canola | cytosol | 50.16 | 46.27 |
| CDY26096 | Canola | nucleus | 44.01 | 46.26 |
| CDY56022 | Canola | nucleus | 46.28 | 45.69 |
| CDY32791 | Canola | nucleus | 48.54 | 42.61 |
| CDY56080 | Canola | cytosol | 38.51 | 41.9 |
| GSMUA_Achr11P... | Banana | nucleus | 36.57 | 41.85 |
| CDX92768 | Canola | nucleus | 41.75 | 41.75 |
| CDY50031 | Canola | cytosol | 39.16 | 41.72 |
| CDX92770 | Canola | nucleus | 42.07 | 40.12 |
| CDY28208 | Canola | cytosol | 29.45 | 39.22 |
| CDX89343 | Canola | cytosol, mitochondrion | 44.66 | 39.2 |
| CDY42740 | Canola | nucleus | 40.78 | 39.13 |
| Zm00001d010635_P001 | Maize | nucleus | 37.22 | 36.86 |
| CDY56081 | Canola | nucleus | 28.48 | 36.82 |
| Os03t0812200-01 | Rice | nucleus | 43.37 | 36.31 |
| Os05t0488800-01 | Rice | nucleus | 37.86 | 36.22 |
| CDX94342 | Canola | mitochondrion, nucleus | 44.66 | 35.66 |
| TraesCS1D01G305300.1 | Wheat | nucleus | 36.89 | 34.34 |
| TraesCS1B01G316300.1 | Wheat | nucleus | 36.57 | 34.04 |
| Zm00001d038528_P001 | Maize | cytosol | 36.57 | 33.93 |
| CDX82271 | Canola | cytosol | 23.3 | 33.8 |
| CDY36069 | Canola | cytosol | 23.3 | 33.18 |
| Zm00001d013005_P002 | Maize | nucleus | 39.81 | 33.15 |
| HORVU5Hr1G111530.1 | Barley | nucleus | 42.39 | 32.91 |
| TraesCS5B01G480100.1 | Wheat | nucleus | 42.72 | 32.84 |
| TraesCS5D01G480800.1 | Wheat | nucleus | 42.72 | 32.67 |
| KXG37275 | Sorghum | nucleus | 40.45 | 32.64 |
| TraesCS5A01G467700.1 | Wheat | nucleus | 42.39 | 32.43 |
| CDY72364 | Canola | cytosol | 22.65 | 31.53 |
| KXG22238 | Sorghum | plastid | 38.84 | 30.85 |
| HORVU1Hr1G068950.2 | Barley | golgi | 37.22 | 29.79 |
| CDX94665 | Canola | nucleus | 22.01 | 28.94 |
| CDY68603 | Canola | cytosol | 22.65 | 28.93 |
| CDY32333 | Canola | cytosol | 20.06 | 26.38 |
| CDY24592 | Canola | nucleus | 27.18 | 26.17 |
| CDY25360 | Canola | cytosol, nucleus, plastid | 27.18 | 26.01 |
| CDX81263 | Canola | cytosol, peroxisome, plastid | 24.27 | 25.86 |
| CDY22790 | Canola | nucleus | 22.33 | 25.56 |
| CDY33437 | Canola | cytosol | 26.54 | 25.31 |
| CDY18690 | Canola | cytosol, peroxisome, plastid | 24.27 | 25.08 |
| CDY11934 | Canola | nucleus | 51.13 | 24.23 |
| CDY23878 | Canola | mitochondrion, nucleus | 23.3 | 23.61 |
| CDY22483 | Canola | mitochondrion | 22.65 | 23.1 |
| CDY27204 | Canola | mitochondrion, nucleus | 22.65 | 22.44 |
| CDX75998 | Canola | nucleus | 13.92 | 22.4 |
| CDY42507 | Canola | cytosol | 24.27 | 22.12 |
| CDY35437 | Canola | mitochondrion, nucleus | 22.65 | 22.08 |
| CDY53450 | Canola | cytosol | 22.98 | 22.05 |
| CDX72127 | Canola | mitochondrion | 22.33 | 21.84 |
| CDX74533 | Canola | cytosol | 20.39 | 21.58 |
| CDX79968 | Canola | mitochondrion, nucleus | 20.39 | 21.21 |
| CDX80258 | Canola | plastid | 24.27 | 21.13 |
| CDY61251 | Canola | cytosol | 24.27 | 20.78 |
| CDY01669 | Canola | plastid | 20.71 | 19.81 |
| CDX88709 | Canola | cytosol, plastid | 25.24 | 19.8 |
| CDX99105 | Canola | cytosol, plastid | 19.74 | 18.83 |
| CDY20473 | Canola | nucleus, plastid | 20.06 | 18.56 |
| CDY07641 | Canola | nucleus | 21.68 | 17.91 |
| CDX74839 | Canola | cytosol, plastid | 18.77 | 17.9 |
| CDY33046 | Canola | plastid | 19.74 | 17.84 |
| CDX94901 | Canola | cytosol | 17.8 | 17.52 |
| CDY48679 | Canola | cytosol, plastid | 18.77 | 17.37 |
| CDY24951 | Canola | nucleus | 21.04 | 17.33 |
| CDX69496 | Canola | cytosol | 13.92 | 14.93 |
| CDY69134 | Canola | cytosol | 13.27 | 14.09 |
| CDX78323 | Canola | cytosol | 12.95 | 13.89 |
| CDY21513 | Canola | cytosol | 15.53 | 13.48 |
| CDX69973 | Canola | cytosol | 15.53 | 13.33 |
| CDY26465 | Canola | cytosol | 14.56 | 13.27 |
| CDY58938 | Canola | nucleus | 18.45 | 12.93 |
| CDX90972 | Canola | cytosol | 13.92 | 12.84 |
| CDY03622 | Canola | nucleus | 18.45 | 12.78 |
| CDY34722 | Canola | cytosol | 15.86 | 12.56 |
| CDY34721 | Canola | cytosol | 15.86 | 12.56 |
| CDY02194 | Canola | peroxisome | 15.53 | 12.06 |
| CDY51628 | Canola | peroxisome | 15.53 | 11.82 |
| CDX85531 | Canola | cytosol | 12.95 | 11.66 |
| CDY01221 | Canola | cytosol | 7.44 | 10.55 |
Protein Annotations
| EnsemblPlants:CDY43991 | EnsemblPlantsGene:GSBRNA2T00079385001 | Gene3D:3.30.40.10 | GO:A0A078I2F7 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR44576 | PANTHER:PTHR44576:SF1 | PFAM:PF13639 | PFAM:PF14369 |
| PFscan:PS50089 | ProteinID:CDY43991 | ProteinID:CDY43991.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 |
| UniParc:UPI000254807F | UniProt:A0A078I2F7 | MapMan:35.1 | : | : | : |
Description
BnaA05g25860DBnaA05g25860D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I2F7]
Coordinates
chrLK032576:-:41227..42789
Molecular Weight (calculated)
34545.4 Da
IEP (calculated)
3.925
GRAVY (calculated)
-0.709
Length
309 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDANAIRYW CHMCSRSVNP VIEGDVINCN FCQSGFVEEM DETPEQATND HPHQASESLW APILLGMMND HDQNQRDSES NVENEDDDDD DDDGQINDGE
101: FDLERHLEEI MRRRRRHSAA ILDLLQGIRA GLSVESENNQ DNNNQDNELV VLINSFNQRI RIQDSVDASA VPSGSLGDYF IGPGFEMLLQ RLAENDPNNR
201: YGTPPATKEA VESLETVMVE ESLVQCTVCL DDFEIGVEAK EMPCKHKFHS ECLLPWLELH SSCPVCRYLL PTGDDDGEAK TDGETSSNVS MENNGTSVDS
301: SSNNPSVND
101: FDLERHLEEI MRRRRRHSAA ILDLLQGIRA GLSVESENNQ DNNNQDNELV VLINSFNQRI RIQDSVDASA VPSGSLGDYF IGPGFEMLLQ RLAENDPNNR
201: YGTPPATKEA VESLETVMVE ESLVQCTVCL DDFEIGVEAK EMPCKHKFHS ECLLPWLELH SSCPVCRYLL PTGDDDGEAK TDGETSSNVS MENNGTSVDS
301: SSNNPSVND
001: MEDASETSYW CHMCSRSVIP LIQDEIIKCN FCQSGFVEEM DNNDDHQAAD SLWTPILMEM MNNNHDQHST NQEDSESILE DEDEDEDDGD DGDQNNDGEI
101: DITHQLEEIR RIRTRHSTAI VNLLQGIRAG LLIESENNED NPDNSELVVL INSFNQRIRV HQDSVDTTSV PSGSLGDYFI GPGFETLLQR LAENDLNNRY
201: GTPPATKEAV EALAMVKIED SLLQCSVCLD DFEIGMEAKE MPCKHKFHSD CLLPWLELHS SCPVCRYLLP TGDDDEPKTD AETSRNDDNN EDISNASMAS
301: NGSSPDSSSN NSSVN
101: DITHQLEEIR RIRTRHSTAI VNLLQGIRAG LLIESENNED NPDNSELVVL INSFNQRIRV HQDSVDTTSV PSGSLGDYFI GPGFETLLQR LAENDLNNRY
201: GTPPATKEAV EALAMVKIED SLLQCSVCLD DFEIGMEAKE MPCKHKFHSD CLLPWLELHS SCPVCRYLLP TGDDDEPKTD AETSRNDDNN EDISNASMAS
301: NGSSPDSSSN NSSVN
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LJE9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.