CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d013005_P002	Maize	nucleus	86.42	89.22
Os03t0812200-01	Rice	nucleus	71.54	74.25
HORVU5Hr1G111530.1	Barley	nucleus	67.89	65.33
TraesCS5D01G480800.1	Wheat	nucleus	68.41	64.85
TraesCS5B01G480100.1	Wheat	nucleus	67.62	64.43
TraesCS5A01G467700.1	Wheat	nucleus	67.62	64.11
GSMUA_Achr11P...	Banana	nucleus	32.64	46.3
CDY46577	Canola	nucleus	34.2	45.02
VIT_06s0004g00120.t01	Wine grape	nucleus	41.25	42.93
KRG97316	Soybean	nucleus	38.12	42.44
PGSC0003DMT400046527	Potato	nucleus	39.69	42.22
CDX92768	Canola	nucleus	33.16	41.1
CDY10554	Canola	cytosol	32.64	40.98
AT3G13430.2	Thale cress	nucleus	33.42	40.63
CDY56022	Canola	nucleus	33.16	40.58
Bra027436.1-P	Field mustard	nucleus	32.64	40.45
CDY43991	Canola	nucleus	32.64	40.45
Bra030854.1-P	Field mustard	nucleus	32.9	40.38
AT1G55530.2	Thale cress	nucleus	36.55	39.89
Bra002823.1-P	Field mustard	nucleus	36.29	39.49
CDY32791	Canola	nucleus	36.03	39.2
CDX92770	Canola	nucleus	33.16	39.2
AT5G56340.1	Thale cress	nucleus	39.95	38.64
CDY42740	Canola	nucleus	32.38	38.51
Bra019109.1-P	Field mustard	nucleus	32.11	38.2
CDY56080	Canola	cytosol	28.2	38.03
CDY28208	Canola	cytosol	22.72	37.5
Bra011215.1-P	Field mustard	cytosol	22.72	37.5
CDY26096	Canola	nucleus	28.72	37.41
AT4G26400.1	Thale cress	nucleus	34.46	37.08
KXG22238	Sorghum	plastid	37.08	36.5
Bra037109.1-P	Field mustard	nucleus	31.59	36.23
CDY50031	Canola	cytosol	27.42	36.21
KXG39475	Sorghum	cytosol	30.29	36.14
CDY56081	Canola	nucleus	22.45	35.98
Bra037999.1-P	Field mustard	nucleus	27.15	35.86
Bra026444.1-P	Field mustard	nucleus	34.73	35.85
CDY08249	Canola	cytosol	31.33	35.82
CDX89343	Canola	cytosol, mitochondrion	31.85	34.66
Solyc01g050040.2.1	Tomato	nucleus	25.85	33.9
EES00577	Sorghum	nucleus	31.59	33.7
CDX94342	Canola	mitochondrion, nucleus	33.16	32.82
KRH70139	Soybean	nucleus	24.28	29.15
KRH08483	Soybean	cytosol, nucleus, plastid	24.02	28.57
EER92269	Sorghum	nucleus	20.37	27.37
EER89027	Sorghum	nucleus	21.67	25.86
Bra028935.1-P	Field mustard	nucleus	37.08	25.0
EER95109	Sorghum	plastid	17.49	24.36
CDY11934	Canola	nucleus	37.34	21.93
KXG33564	Sorghum	mitochondrion	16.97	21.52
CDY23599	Canola	golgi, mitochondrion	32.64	20.53
OQU85475	Sorghum	cytosol	15.93	19.06
EES14331	Sorghum	plastid	14.1	18.43
EES17560	Sorghum	plastid	19.58	18.16
EER89401	Sorghum	mitochondrion, nucleus	15.4	17.66
EER90075	Sorghum	nucleus	13.84	17.49
KXG31176	Sorghum	plastid	16.19	17.42
OQU84547	Sorghum	cytoskeleton, cytosol, nucleus	17.49	17.31

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	UniProt:A0A1B6QH78	ncoils:Coil	InterPro:IPR001841	InterPro:IPR013083
EnsemblPlants:KXG37275	ProteinID:KXG37275	ProteinID:KXG37275.1	ProteinID:KXG37276.1	ProteinID:OQU90757.1	PFAM:PF13639
PFAM:PF14369	PFscan:PS50089	PANTHER:PTHR44576	PANTHER:PTHR44576:SF4	SMART:SM00184	EnsemblPlantsGene:SORBI_3001G040500
SUPFAM:SSF57850	UniParc:UPI0001C80C63	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:-:3016610..3019552

Molecular Weight (calculated)

42810.0 Da

IEP (calculated)

4.397

GRAVY (calculated)

-0.879

Length

383 amino acids

Sequence
(BLAST)

001: MDEGQGVRYW CHRCEEVIDP MPEMKCPSCD GGFVEEMGSE DFEAATNARS DRSLSLLAPL LFGMLGGSSR RSRLRREAMA DDDADEDDEE DDSDHELEAS
101: SRRRRRRGSS ALLRMLQTIR DRDDVRGSDD TDSDTERDLE RARRERIERR MARERIQERM ERQRERARQI ERVSARGRER TESLILINSN NEAIILQGTF
201: GSDDNQEDSS NTSSGVSLGD YFLGPALDTL LQRLAESDLN RSGTPPAKKE AVAALPTVNI EEVLGCSVCL EDFEMGAEAK QMPCQHKFHS HCILPWLELH
301: SSCPICRFQL PTEETKNPCE SASTAGAMNR DGDNAAASSS DTESSNRNGD NHSDSPIFSA LSTLFSDPFS SDDDESVPHS SEN

Best Arabidopsis Sequence Match ( AT5G56340.1 )
(BLAST)

001: MEETMAARYW CHMCSQMVNP VMESEIKCPF CQSGFIEEMS GNGGGGGGRG IRDVQDSETD FGTDRALSLW APILLGMMSS PRRRRRFRRS EFGEENDDNG
101: DDLTTNADGN GNDSNNSNNN VYRHHRARRH GGEIDLDREF ESILRRRRRS SGNILQLLQG IRAGIASEYE SSDNNWDNSR ERDRVIMINP YNQSLVVPSD
201: QNQNHPSLTS LGDYFIGPGL DLLLQHLAEN DPNRQGTPPA RKEAVEALPT VKIMEPLQCS VCLDDFEKGT EAKEMPCKHK FHVRCIVPWL ELHSSCPVCR
301: FELPSSADDD DETKTDSERV LRTRNVRETS NGNVVENVGN ADRGREDEVR SGNGRRFSFP WPFSGLFSSS SSSSSSTSGS QSGENNFFSR SSGSSR

Arabidopsis Description

ATCRT1RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FM98]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.