Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
- mitochondrion 3
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDX89343 | Canola | cytosol, mitochondrion | 83.98 | 92.33 |
Bra026444.1-P | Field mustard | nucleus | 80.36 | 83.83 |
CDX92768 | Canola | nucleus | 54.52 | 68.28 |
CDX92770 | Canola | nucleus | 57.11 | 68.21 |
CDY42740 | Canola | nucleus | 56.33 | 67.7 |
AT4G26400.1 | Thale cress | nucleus | 62.02 | 67.42 |
CDY46577 | Canola | nucleus | 43.15 | 57.39 |
CDY32791 | Canola | nucleus | 48.32 | 53.12 |
KRG97316 | Soybean | nucleus | 44.44 | 50.0 |
GSMUA_Achr11P... | Banana | nucleus | 32.82 | 47.04 |
VIT_06s0004g00120.t01 | Wine grape | nucleus | 43.67 | 45.92 |
PGSC0003DMT400046527 | Potato | nucleus | 41.6 | 44.72 |
CDY43991 | Canola | nucleus | 35.66 | 44.66 |
CDY26096 | Canola | nucleus | 33.85 | 44.56 |
CDY08249 | Canola | cytosol | 36.95 | 42.69 |
CDY10554 | Canola | cytosol | 32.3 | 40.98 |
CDY56022 | Canola | nucleus | 32.56 | 40.26 |
CDY50031 | Canola | cytosol | 27.91 | 37.24 |
CDY56080 | Canola | cytosol | 26.87 | 36.62 |
Zm00001d010635_P001 | Maize | nucleus | 28.68 | 35.58 |
Os03t0812200-01 | Rice | nucleus | 33.85 | 35.5 |
Os05t0488800-01 | Rice | nucleus | 29.46 | 35.29 |
TraesCS1B01G316300.1 | Wheat | nucleus | 29.72 | 34.64 |
TraesCS1D01G305300.1 | Wheat | nucleus | 29.72 | 34.64 |
CDX82271 | Canola | cytosol | 18.86 | 34.27 |
Zm00001d038528_P001 | Maize | cytosol | 29.46 | 34.23 |
CDY11934 | Canola | nucleus | 57.62 | 34.2 |
Zm00001d013005_P002 | Maize | nucleus | 32.3 | 33.69 |
CDY36069 | Canola | cytosol | 18.86 | 33.64 |
KXG37275 | Sorghum | nucleus | 32.82 | 33.16 |
CDY72364 | Canola | cytosol | 18.6 | 32.43 |
KXG22238 | Sorghum | plastid | 32.3 | 32.13 |
HORVU1Hr1G068950.2 | Barley | golgi | 32.04 | 32.12 |
CDY28208 | Canola | cytosol | 19.12 | 31.9 |
CDY56081 | Canola | nucleus | 19.64 | 31.8 |
TraesCS5B01G480100.1 | Wheat | nucleus | 32.82 | 31.59 |
HORVU5Hr1G111530.1 | Barley | nucleus | 32.3 | 31.41 |
TraesCS5A01G467700.1 | Wheat | nucleus | 32.56 | 31.19 |
TraesCS5D01G480800.1 | Wheat | nucleus | 32.56 | 31.19 |
Solyc01g050040.2.1 | Tomato | nucleus | 23.26 | 30.82 |
CDX75998 | Canola | nucleus | 14.47 | 29.17 |
CDY68603 | Canola | cytosol | 17.57 | 28.1 |
CDY25360 | Canola | cytosol, nucleus, plastid | 23.0 | 27.55 |
CDY24592 | Canola | nucleus | 22.74 | 27.41 |
CDY32333 | Canola | cytosol | 16.54 | 27.23 |
CDY23878 | Canola | mitochondrion, nucleus | 21.45 | 27.21 |
CDY22483 | Canola | mitochondrion | 20.67 | 26.4 |
CDX94665 | Canola | nucleus | 16.02 | 26.38 |
CDY27204 | Canola | mitochondrion, nucleus | 20.93 | 25.96 |
CDY33437 | Canola | cytosol | 21.71 | 25.93 |
CDX79968 | Canola | mitochondrion, nucleus | 19.9 | 25.93 |
CDX72127 | Canola | mitochondrion | 20.93 | 25.63 |
CDY22790 | Canola | nucleus | 17.31 | 24.81 |
CDY35437 | Canola | mitochondrion, nucleus | 19.9 | 24.29 |
CDY23599 | Canola | golgi, mitochondrion | 37.73 | 23.97 |
CDY53450 | Canola | cytosol | 19.12 | 22.98 |
CDX81263 | Canola | cytosol, peroxisome, plastid | 17.05 | 22.76 |
CDX74533 | Canola | cytosol | 17.05 | 22.6 |
CDY18690 | Canola | cytosol, peroxisome, plastid | 17.31 | 22.41 |
CDX80258 | Canola | plastid | 20.16 | 21.97 |
CDX94901 | Canola | cytosol | 17.57 | 21.66 |
CDY61251 | Canola | cytosol | 20.16 | 21.61 |
CDX88709 | Canola | cytosol, plastid | 21.71 | 21.32 |
CDY42507 | Canola | cytosol | 18.6 | 21.24 |
CDY01669 | Canola | plastid | 17.05 | 20.43 |
CDX99105 | Canola | cytosol, plastid | 16.8 | 20.06 |
CDY33046 | Canola | plastid | 16.8 | 19.01 |
CDY07641 | Canola | nucleus | 18.35 | 18.98 |
CDY20473 | Canola | nucleus, plastid | 15.76 | 18.26 |
CDY48679 | Canola | cytosol, plastid | 15.76 | 18.26 |
CDX74839 | Canola | cytosol, plastid | 15.25 | 18.21 |
CDY24951 | Canola | nucleus | 17.57 | 18.13 |
CDX78323 | Canola | cytosol | 12.66 | 17.01 |
CDY69134 | Canola | cytosol | 12.4 | 16.49 |
CDY03622 | Canola | nucleus | 17.83 | 15.47 |
CDY58938 | Canola | nucleus | 17.57 | 15.42 |
CDY01221 | Canola | cytosol | 8.53 | 15.14 |
CDX69973 | Canola | cytosol | 13.7 | 14.72 |
CDY21513 | Canola | cytosol | 12.92 | 14.04 |
CDX90972 | Canola | cytosol | 12.14 | 14.03 |
CDX69496 | Canola | cytosol | 10.08 | 13.54 |
CDY26465 | Canola | cytosol | 11.63 | 13.27 |
CDY34722 | Canola | cytosol | 13.18 | 13.08 |
CDY34721 | Canola | cytosol | 13.18 | 13.08 |
CDX85531 | Canola | cytosol | 11.11 | 12.54 |
CDY02194 | Canola | peroxisome | 12.4 | 12.06 |
CDY51628 | Canola | peroxisome | 12.4 | 11.82 |
Protein Annotations
EnsemblPlants:CDX94342 | EnsemblPlantsGene:GSBRNA2T00157454001 | Gene3D:3.30.40.10 | GO:A0A078DZJ4 | InterPro:IPR001841 | InterPro:IPR013083 |
InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR44576 | PANTHER:PTHR44576:SF1 | PFAM:PF13639 | PFAM:PF14369 |
PFscan:PS50089 | ProteinID:CDX94342 | ProteinID:CDX94342.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 |
UniParc:UPI0004EE3F99 | MapMan:35.1 | : | : | : | : |
Description
BnaC01g18420D
Coordinates
chrLK031881:+:366049..367892
Molecular Weight (calculated)
43464.7 Da
IEP (calculated)
6.075
GRAVY (calculated)
-0.626
Length
387 amino acids
Sequence
(BLAST)
(BLAST)
001: MGFRIGSANN YCSFSPPRVL SSWGRSKEET RSYPFPLDLQ KAGTFARELD FLTNLLRYFR HKRETEFGGE EEAMAARYWC HMCSQMVNPP VIEAEIKCPF
101: CHSGFVEEMS GELNDGGSGS SIREVQDSEI DFGTDRALSQ WGPILLGMMS NPRRRRRFRR TELGLDNDAF DSIIRRRRRS SAAILQLLQG IREGINTEDE
201: SSERNQFNTA FNFIRNNTSP SGSGDNFVGT GLAHLLEHLA DNDPTRHGSL PARKEAVESL PTVKICETLQ CSVCLDEFEK GSEAKEMPCK HKFHVGCIVP
301: WLELHSSCPV CRYELPPDDE VKADLLRPRT RSVEINRSDV EEDARNTSGN ERRFSFGWRF SGLFSSSASS SSGSAASGSS QLNENSN
101: CHSGFVEEMS GELNDGGSGS SIREVQDSEI DFGTDRALSQ WGPILLGMMS NPRRRRRFRR TELGLDNDAF DSIIRRRRRS SAAILQLLQG IREGINTEDE
201: SSERNQFNTA FNFIRNNTSP SGSGDNFVGT GLAHLLEHLA DNDPTRHGSL PARKEAVESL PTVKICETLQ CSVCLDEFEK GSEAKEMPCK HKFHVGCIVP
301: WLELHSSCPV CRYELPPDDE VKADLLRPRT RSVEINRSDV EEDARNTSGN ERRFSFGWRF SGLFSSSASS SSGSAASGSS QLNENSN
001: MSARYWCHMC SQMVNPVIGA EIKCPFCQSG FVEEMSREIN GGSSSSLREV QDPEIDFGTD RALSLWGPIL LGMMSNPRRR RRFRRTEFGV DNDEVNVSDD
101: VDGNDSVDID RHHHRRHRHR QQGREIDLDR EFESILRRRR RSSATILQLL QGIRAGIASE YESSDRDLLN QSAVVQGSTS LNQNRNNTSL SAIGDYFVGS
201: SLDHLLEHLA DNDSIRHGSL PARKEVVDNL PTVKISESLQ CSICLDDFDK GSEAKEMPCK HKFHIRCIVP WLELHSSCPV CRYELPPDDE TKVNPVRPRT
301: RTLEINVSNE NVEDDARNSN VSERRFSFPW PFSGLFSSSS SSSASASGSS HLGENS
101: VDGNDSVDID RHHHRRHRHR QQGREIDLDR EFESILRRRR RSSATILQLL QGIRAGIASE YESSDRDLLN QSAVVQGSTS LNQNRNNTSL SAIGDYFVGS
201: SLDHLLEHLA DNDSIRHGSL PARKEVVDNL PTVKISESLQ CSICLDDFDK GSEAKEMPCK HKFHIRCIVP WLELHSSCPV CRYELPPDDE TKVNPVRPRT
301: RTLEINVSNE NVEDDARNSN VSERRFSFPW PFSGLFSSSS SSSASASGSS HLGENS
Arabidopsis Description
AT4G26400 protein [Source:UniProtKB/TrEMBL;Acc:Q8L5Z3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.