Skip to main content
crop-pal logo
Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, nucleus

Predictor Summary:
  • nucleus 3
  • plastid 2
  • mitochondrion 3
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX89343 Canola cytosol, mitochondrion 83.98 92.33
Bra026444.1-P Field mustard nucleus 80.36 83.83
CDX92768 Canola nucleus 54.52 68.28
CDX92770 Canola nucleus 57.11 68.21
CDY42740 Canola nucleus 56.33 67.7
AT4G26400.1 Thale cress nucleus 62.02 67.42
CDY46577 Canola nucleus 43.15 57.39
CDY32791 Canola nucleus 48.32 53.12
KRG97316 Soybean nucleus 44.44 50.0
GSMUA_Achr11P... Banana nucleus 32.82 47.04
VIT_06s0004g00120.t01 Wine grape nucleus 43.67 45.92
PGSC0003DMT400046527 Potato nucleus 41.6 44.72
CDY43991 Canola nucleus 35.66 44.66
CDY26096 Canola nucleus 33.85 44.56
CDY08249 Canola cytosol 36.95 42.69
CDY10554 Canola cytosol 32.3 40.98
CDY56022 Canola nucleus 32.56 40.26
CDY50031 Canola cytosol 27.91 37.24
CDY56080 Canola cytosol 26.87 36.62
Zm00001d010635_P001 Maize nucleus 28.68 35.58
Os03t0812200-01 Rice nucleus 33.85 35.5
Os05t0488800-01 Rice nucleus 29.46 35.29
TraesCS1B01G316300.1 Wheat nucleus 29.72 34.64
TraesCS1D01G305300.1 Wheat nucleus 29.72 34.64
CDX82271 Canola cytosol 18.86 34.27
Zm00001d038528_P001 Maize cytosol 29.46 34.23
CDY11934 Canola nucleus 57.62 34.2
Zm00001d013005_P002 Maize nucleus 32.3 33.69
CDY36069 Canola cytosol 18.86 33.64
KXG37275 Sorghum nucleus 32.82 33.16
CDY72364 Canola cytosol 18.6 32.43
KXG22238 Sorghum plastid 32.3 32.13
HORVU1Hr1G068950.2 Barley golgi 32.04 32.12
CDY28208 Canola cytosol 19.12 31.9
CDY56081 Canola nucleus 19.64 31.8
TraesCS5B01G480100.1 Wheat nucleus 32.82 31.59
HORVU5Hr1G111530.1 Barley nucleus 32.3 31.41
TraesCS5A01G467700.1 Wheat nucleus 32.56 31.19
TraesCS5D01G480800.1 Wheat nucleus 32.56 31.19
Solyc01g050040.2.1 Tomato nucleus 23.26 30.82
CDX75998 Canola nucleus 14.47 29.17
CDY68603 Canola cytosol 17.57 28.1
CDY25360 Canola cytosol, nucleus, plastid 23.0 27.55
CDY24592 Canola nucleus 22.74 27.41
CDY32333 Canola cytosol 16.54 27.23
CDY23878 Canola mitochondrion, nucleus 21.45 27.21
CDY22483 Canola mitochondrion 20.67 26.4
CDX94665 Canola nucleus 16.02 26.38
CDY27204 Canola mitochondrion, nucleus 20.93 25.96
CDY33437 Canola cytosol 21.71 25.93
CDX79968 Canola mitochondrion, nucleus 19.9 25.93
CDX72127 Canola mitochondrion 20.93 25.63
CDY22790 Canola nucleus 17.31 24.81
CDY35437 Canola mitochondrion, nucleus 19.9 24.29
CDY23599 Canola golgi, mitochondrion 37.73 23.97
CDY53450 Canola cytosol 19.12 22.98
CDX81263 Canola cytosol, peroxisome, plastid 17.05 22.76
CDX74533 Canola cytosol 17.05 22.6
CDY18690 Canola cytosol, peroxisome, plastid 17.31 22.41
CDX80258 Canola plastid 20.16 21.97
CDX94901 Canola cytosol 17.57 21.66
CDY61251 Canola cytosol 20.16 21.61
CDX88709 Canola cytosol, plastid 21.71 21.32
CDY42507 Canola cytosol 18.6 21.24
CDY01669 Canola plastid 17.05 20.43
CDX99105 Canola cytosol, plastid 16.8 20.06
CDY33046 Canola plastid 16.8 19.01
CDY07641 Canola nucleus 18.35 18.98
CDY20473 Canola nucleus, plastid 15.76 18.26
CDY48679 Canola cytosol, plastid 15.76 18.26
CDX74839 Canola cytosol, plastid 15.25 18.21
CDY24951 Canola nucleus 17.57 18.13
CDX78323 Canola cytosol 12.66 17.01
CDY69134 Canola cytosol 12.4 16.49
CDY03622 Canola nucleus 17.83 15.47
CDY58938 Canola nucleus 17.57 15.42
CDY01221 Canola cytosol 8.53 15.14
CDX69973 Canola cytosol 13.7 14.72
CDY21513 Canola cytosol 12.92 14.04
CDX90972 Canola cytosol 12.14 14.03
CDX69496 Canola cytosol 10.08 13.54
CDY26465 Canola cytosol 11.63 13.27
CDY34722 Canola cytosol 13.18 13.08
CDY34721 Canola cytosol 13.18 13.08
CDX85531 Canola cytosol 11.11 12.54
CDY02194 Canola peroxisome 12.4 12.06
CDY51628 Canola peroxisome 12.4 11.82
Protein Annotations
EnsemblPlants:CDX94342EnsemblPlantsGene:GSBRNA2T00157454001Gene3D:3.30.40.10GO:A0A078DZJ4InterPro:IPR001841InterPro:IPR013083
InterPro:Znf_RINGInterPro:Znf_RING/FYVE/PHDPANTHER:PTHR44576PANTHER:PTHR44576:SF1PFAM:PF13639PFAM:PF14369
PFscan:PS50089ProteinID:CDX94342ProteinID:CDX94342.1SEG:segSMART:SM00184SUPFAM:SSF57850
UniParc:UPI0004EE3F99MapMan:35.1::::
Description
BnaC01g18420D
Coordinates
chrLK031881:+:366049..367892
Molecular Weight (calculated)
43464.7 Da
IEP (calculated)
6.075
GRAVY (calculated)
-0.626
Length
387 amino acids
Sequence
(BLAST)
001: MGFRIGSANN YCSFSPPRVL SSWGRSKEET RSYPFPLDLQ KAGTFARELD FLTNLLRYFR HKRETEFGGE EEAMAARYWC HMCSQMVNPP VIEAEIKCPF
101: CHSGFVEEMS GELNDGGSGS SIREVQDSEI DFGTDRALSQ WGPILLGMMS NPRRRRRFRR TELGLDNDAF DSIIRRRRRS SAAILQLLQG IREGINTEDE
201: SSERNQFNTA FNFIRNNTSP SGSGDNFVGT GLAHLLEHLA DNDPTRHGSL PARKEAVESL PTVKICETLQ CSVCLDEFEK GSEAKEMPCK HKFHVGCIVP
301: WLELHSSCPV CRYELPPDDE VKADLLRPRT RSVEINRSDV EEDARNTSGN ERRFSFGWRF SGLFSSSASS SSGSAASGSS QLNENSN
Best Arabidopsis Sequence Match ( AT4G26400.1 )
(BLAST)
001: MSARYWCHMC SQMVNPVIGA EIKCPFCQSG FVEEMSREIN GGSSSSLREV QDPEIDFGTD RALSLWGPIL LGMMSNPRRR RRFRRTEFGV DNDEVNVSDD
101: VDGNDSVDID RHHHRRHRHR QQGREIDLDR EFESILRRRR RSSATILQLL QGIRAGIASE YESSDRDLLN QSAVVQGSTS LNQNRNNTSL SAIGDYFVGS
201: SLDHLLEHLA DNDSIRHGSL PARKEVVDNL PTVKISESLQ CSICLDDFDK GSEAKEMPCK HKFHIRCIVP WLELHSSCPV CRYELPPDDE TKVNPVRPRT
301: RTLEINVSNE NVEDDARNSN VSERRFSFPW PFSGLFSSSS SSSASASGSS HLGENS
Arabidopsis Description
AT4G26400 protein [Source:UniProtKB/TrEMBL;Acc:Q8L5Z3]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.