Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 4
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra004589.1-P | Field mustard | nucleus | 75.08 | 91.39 |
| CDY23878 | Canola | mitochondrion, nucleus | 89.9 | 87.54 |
| CDY35437 | Canola | mitochondrion, nucleus | 83.17 | 77.92 |
| CDY22483 | Canola | mitochondrion | 78.79 | 77.23 |
| AT2G40830.4 | Thale cress | mitochondrion | 83.84 | 75.91 |
| CDX75998 | Canola | nucleus | 39.73 | 61.46 |
| CDY27204 | Canola | mitochondrion, nucleus | 62.29 | 59.29 |
| CDX72127 | Canola | mitochondrion | 62.63 | 58.86 |
| KRH33121 | Soybean | nucleus | 53.54 | 51.46 |
| KRH71659 | Soybean | nucleus | 52.86 | 50.81 |
| VIT_08s0040g00590.t01 | Wine grape | nucleus | 51.52 | 48.73 |
| CDX94901 | Canola | cytosol | 51.52 | 48.73 |
| GSMUA_AchrUn_... | Banana | nucleus | 39.39 | 45.35 |
| VIT_06s0009g02350.t01 | Wine grape | mitochondrion | 51.18 | 45.24 |
| Os03t0351800-01 | Rice | nucleus | 42.42 | 44.52 |
| GSMUA_AchrUn_... | Banana | cytosol, mitochondrion, nucleus, plastid | 38.72 | 44.4 |
| EER92269 | Sorghum | nucleus | 42.09 | 43.86 |
| KRH14643 | Soybean | nucleus | 49.16 | 43.45 |
| Solyc01g009000.2.1 | Tomato | plastid | 46.46 | 43.4 |
| PGSC0003DMT400058464 | Potato | nucleus | 46.13 | 43.08 |
| Zm00001d047476_P001 | Maize | mitochondrion | 41.75 | 42.47 |
| HORVU3Hr1G096110.1 | Barley | mitochondrion | 40.4 | 41.52 |
| TraesCS3D01G432800.1 | Wheat | mitochondrion | 40.07 | 41.18 |
| TraesCS3A01G440000.1 | Wheat | mitochondrion | 40.07 | 41.18 |
| GSMUA_Achr8P09890_001 | Banana | nucleus | 31.99 | 41.13 |
| TraesCS3B01G474100.1 | Wheat | mitochondrion | 39.73 | 40.97 |
| KRH18631 | Soybean | nucleus | 41.08 | 39.87 |
| PGSC0003DMT400079301 | Potato | nucleus | 39.39 | 39.0 |
| Solyc08g075910.1.1 | Tomato | nucleus | 39.06 | 38.54 |
| KRH73496 | Soybean | mitochondrion | 46.46 | 37.2 |
| KRH18634 | Soybean | nucleus | 28.62 | 36.02 |
| GSMUA_Achr11P... | Banana | mitochondrion | 35.02 | 34.78 |
| CDY72364 | Canola | cytosol | 21.21 | 28.38 |
| CDX82271 | Canola | cytosol | 20.2 | 28.17 |
| CDY36069 | Canola | cytosol | 20.54 | 28.11 |
| CDY46577 | Canola | nucleus | 26.6 | 27.15 |
| CDY22790 | Canola | nucleus | 23.23 | 25.56 |
| CDX74533 | Canola | cytosol | 24.92 | 25.34 |
| CDY33437 | Canola | cytosol | 27.61 | 25.31 |
| CDY24592 | Canola | nucleus | 27.27 | 25.23 |
| CDX92768 | Canola | nucleus | 25.59 | 24.6 |
| CDY25360 | Canola | cytosol, nucleus, plastid | 26.6 | 24.46 |
| CDY26096 | Canola | nucleus | 23.91 | 24.15 |
| CDY10554 | Canola | cytosol | 24.24 | 23.61 |
| CDX92770 | Canola | nucleus | 25.59 | 23.46 |
| CDX94665 | Canola | nucleus | 18.52 | 23.4 |
| CDY32791 | Canola | nucleus | 27.61 | 23.3 |
| CDY42740 | Canola | nucleus | 25.25 | 23.29 |
| CDY01669 | Canola | plastid | 24.92 | 22.91 |
| CDY68603 | Canola | cytosol | 18.52 | 22.73 |
| CDY42507 | Canola | cytosol | 25.93 | 22.71 |
| CDY32333 | Canola | cytosol | 17.51 | 22.13 |
| CDY08249 | Canola | cytosol | 24.92 | 22.09 |
| CDY56022 | Canola | nucleus | 23.23 | 22.04 |
| CDY20473 | Canola | nucleus, plastid | 24.58 | 21.86 |
| CDY50031 | Canola | cytosol | 21.21 | 21.72 |
| CDX74839 | Canola | cytosol, plastid | 23.57 | 21.6 |
| CDY56080 | Canola | cytosol | 20.54 | 21.48 |
| CDY56081 | Canola | nucleus | 17.17 | 21.34 |
| CDY61251 | Canola | cytosol | 25.93 | 21.33 |
| CDX89343 | Canola | cytosol, mitochondrion | 25.25 | 21.31 |
| CDX99105 | Canola | cytosol, plastid | 23.23 | 21.3 |
| CDX80258 | Canola | plastid | 25.25 | 21.13 |
| CDY53450 | Canola | cytosol | 22.9 | 21.12 |
| CDY07641 | Canola | nucleus | 25.93 | 20.59 |
| CDY24951 | Canola | nucleus | 25.93 | 20.53 |
| CDY43991 | Canola | nucleus | 21.21 | 20.39 |
| CDX94342 | Canola | mitochondrion, nucleus | 25.93 | 19.9 |
| CDY48679 | Canola | cytosol, plastid | 22.22 | 19.76 |
| CDX81263 | Canola | cytosol, peroxisome, plastid | 18.86 | 19.31 |
| CDY18690 | Canola | cytosol, peroxisome, plastid | 19.19 | 19.06 |
| CDY33046 | Canola | plastid | 21.89 | 19.01 |
| CDX88709 | Canola | cytosol, plastid | 24.92 | 18.78 |
| CDY28208 | Canola | cytosol | 14.48 | 18.53 |
| CDY01221 | Canola | cytosol | 12.46 | 16.97 |
| CDY69134 | Canola | cytosol | 16.16 | 16.49 |
| CDY21513 | Canola | cytosol | 19.19 | 16.01 |
| CDX78323 | Canola | cytosol | 15.49 | 15.97 |
| CDX69973 | Canola | cytosol | 19.19 | 15.83 |
| CDY58938 | Canola | nucleus | 23.23 | 15.65 |
| CDY03622 | Canola | nucleus | 23.23 | 15.47 |
| CDY02194 | Canola | peroxisome | 18.52 | 13.82 |
| CDY51628 | Canola | peroxisome | 18.86 | 13.79 |
| CDX69496 | Canola | cytosol | 12.46 | 12.85 |
| CDY34722 | Canola | cytosol | 16.84 | 12.82 |
| CDY34721 | Canola | cytosol | 16.84 | 12.82 |
| CDY11934 | Canola | nucleus | 26.94 | 12.27 |
| CDX85531 | Canola | cytosol | 13.8 | 11.95 |
| CDX90972 | Canola | cytosol | 13.13 | 11.64 |
| CDY26465 | Canola | cytosol | 13.13 | 11.5 |
| CDY23599 | Canola | golgi, mitochondrion | 20.88 | 10.18 |
Protein Annotations
| EnsemblPlants:CDX79968 | EnsemblPlantsGene:GSBRNA2T00132830001 | Gene3D:3.30.40.10 | GO:A0A078CXW7 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR44290 | PANTHER:PTHR44290:SF1 | PFAM:PF13639 | PFAM:PF14369 |
| PFscan:PS50089 | ProteinID:CDX79968 | ProteinID:CDX79968.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 |
| UniParc:UPI0004EDD1B7 | MapMan:35.1 | : | : | : | : |
Description
BnaA05g01880D
Coordinates
chrLK031819:-:1097989..1099939
Molecular Weight (calculated)
33352.5 Da
IEP (calculated)
7.947
GRAVY (calculated)
-0.827
Length
297 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSGRNTHWC HRCQRAVRLH APDPVCSYCG GGFVEELVTP QAIANPFDIF RSHRDVAERD PAFDLMDAFS AFMRNRLADR ELRGRTITSR PESFPGLAPL
101: LIFGGQVPYR DNAVEALFSN GSPELFEQLS TGVSTRRGPP PAPRSSIDAL PTVKIAQRHL RSSDSNCPVC KEEFELGAEA KQMPCNHVYH SDCIVPWLVQ
201: HNSCPVCRQE LPSARGSSTN ENRTTTRNNR SSSNSNERRN PFSSLWPFRS SGSSSNNNTQ NRGGARNSET TDENHNYHHQ QQQQQSHMGY SGWPFDY
101: LIFGGQVPYR DNAVEALFSN GSPELFEQLS TGVSTRRGPP PAPRSSIDAL PTVKIAQRHL RSSDSNCPVC KEEFELGAEA KQMPCNHVYH SDCIVPWLVQ
201: HNSCPVCRQE LPSARGSSTN ENRTTTRNNR SSSNSNERRN PFSSLWPFRS SGSSSNNNTQ NRGGARNSET TDENHNYHHQ QQQQQSHMGY SGWPFDY
001: MSSSRNTHWC HRCQRAVRLH GQEPVCFYCG GGFVEELDMA QASPFDMFRS HRGVVERDQT FDLMDAFSVF MRNRLAERSH DREIRGRTIS SGPENFPGLA
101: PLLIFGGQVP YRLTGDNAVE ALFNGGSPGI GITRGNTGDY FFGPGLEELF EQLSAGTTRR GPPPAPRSAI DALPTIKIAQ RHLRSSDSNC PVCKDEFELG
201: SEAKQMPCNH IYHSDCIVPW LVQHNSCPVC RQELPSASGP SSSQNRTTPT RNYRSSSSSS SSNSRENGNE RRNPFSSFWP FRSSGSSSSS TQNRGGTRNS
301: DTSDENHNYH QQQHQQSYMG YSGWPFDY
101: PLLIFGGQVP YRLTGDNAVE ALFNGGSPGI GITRGNTGDY FFGPGLEELF EQLSAGTTRR GPPPAPRSAI DALPTIKIAQ RHLRSSDSNC PVCKDEFELG
201: SEAKQMPCNH IYHSDCIVPW LVQHNSCPVC RQELPSASGP SSSQNRTTPT RNYRSSSSSS SSNSRENGNE RRNPFSSFWP FRSSGSSSSS TQNRGGTRNS
301: DTSDENHNYH QQQHQQSYMG YSGWPFDY
Arabidopsis Description
RHC1AProbable E3 ubiquitin-protein ligase RHC1A [Source:UniProtKB/Swiss-Prot;Acc:O22197]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.