Factsheet for Solyc01g009000.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
mitochondrion 3
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400058464	Potato	nucleus	95.28	95.28
Os03t0351800-01	Rice	nucleus	48.11	54.06
EER92269	Sorghum	nucleus	47.8	53.33
TraesCS3D01G432800.1	Wheat	mitochondrion	47.17	51.9
TraesCS3A01G440000.1	Wheat	mitochondrion	47.17	51.9
TraesCS3B01G474100.1	Wheat	mitochondrion	46.86	51.74
Zm00001d047476_P001	Maize	mitochondrion	47.48	51.71
HORVU3Hr1G096110.1	Barley	mitochondrion	46.86	51.56
VIT_06s0009g02350.t01	Wine grape	mitochondrion	54.4	51.49
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus, plastid	41.82	51.35
GSMUA_Achr8P09890_001	Banana	nucleus	36.16	49.78
Bra000207.1-P	Field mustard	mitochondrion, nucleus	46.86	47.0
CDY35437	Canola	mitochondrion, nucleus	46.86	47.0
Bra004589.1-P	Field mustard	nucleus	35.85	46.72
CDX79968	Canola	mitochondrion, nucleus	43.4	46.46
CDY22483	Canola	mitochondrion	44.03	46.2
GSMUA_AchrUn_...	Banana	nucleus	37.42	46.12
AT2G40830.4	Thale cress	mitochondrion	47.48	46.04
CDY23878	Canola	mitochondrion, nucleus	43.4	45.25
CDY27204	Canola	mitochondrion, nucleus	43.71	44.55
Bra007253.1-P	Field mustard	mitochondrion, nucleus	43.4	44.52
CDX72127	Canola	mitochondrion	43.4	43.67
AT3G56580.1	Thale cress	mitochondrion	43.71	43.44
Bra014684.1-P	Field mustard	nucleus	25.47	42.19
CDX75998	Canola	nucleus	25.47	42.19
Solyc08g075910.1.1	Tomato	nucleus	37.74	39.87
GSMUA_Achr11P...	Banana	mitochondrion	35.85	38.13
CDX94901	Canola	cytosol	36.48	36.94
Solyc04g009170.1.1	Tomato	nucleus	27.36	28.16
Solyc01g104260.2.1	Tomato	mitochondrion	25.79	27.33
Solyc11g012950.1.1	Tomato	cytosol	27.36	26.13
Solyc03g098590.2.1	Tomato	cytosol	29.56	25.47
Solyc04g011610.1.1	Tomato	nucleus	30.5	24.56
Solyc06g005650.2.1	Tomato	extracellular	15.41	24.5
Solyc01g050040.2.1	Tomato	nucleus	18.24	19.86
Solyc09g074460.1.1	Tomato	nucleus	20.75	17.51
Solyc02g089410.2.1	Tomato	nucleus	14.47	14.07
Solyc02g065650.1.1	Tomato	cytosol, nucleus, plastid	14.47	11.59
Solyc03g114680.2.1	Tomato	nucleus	17.3	11.04

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	GO:GO:0000209	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016740	GO:GO:0019538
GO:GO:0042787	GO:GO:0043161	GO:GO:0061630	InterPro:IPR001841	InterPro:IPR013083	UniProt:K4AT96
PFAM:PF13639	PFAM:PF14369	PFscan:PS50089	PANTHER:PTHR44290	PANTHER:PTHR44290:SF5	SMART:SM00184
SUPFAM:SSF57850	EnsemblPlantsGene:Solyc01g009000.2	EnsemblPlants:Solyc01g009000.2.1	UniParc:UPI000276332D	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1:+:3012133..3013463

Molecular Weight (calculated)

35282.1 Da

IEP (calculated)

7.677

GRAVY (calculated)

-0.687

Length

318 amino acids

Sequence
(BLAST)

001: MSSGSYTHWC HRCRQPIRPR GTTCLCPNCG GGFIEELDDM VGTRSNIESD PHFGLMDPFP DPRFGIMDAL AAFMRQRMAG RNPNFDIRTR SGVVPGSGRG
101: FGSGPWLIFH GQTPVSMTEN DAFEYFFSNG SPAMGHRRPN FDDLMGPGLQ QLIEQLSVND RQGPPPAPRS AIDALPTVRI TQRHLSIDSQ CSVCQDNFEL
201: GAEARQMPCK HLYHSDCIVP WLVRHNSCPV CRLELPSRAS ASAPANWSSR TGNVSNGSNG SSRENSSQNQ GRRNPFSFLW PFRSSNQNTS NYPERGGGSS
301: STSPYEENNE ANYPAWRF

Best Arabidopsis Sequence Match ( AT2G40830.2 )
(BLAST)

001: MSSSRNTHWC HRCQRAVRLH GQEPVCFYCG GGFVEELDMA QASPFDMFRS HRGVVERDQT FDLMDAFSVF MRNRLAERSH DREIRGRTIS SGPENFPGLA
101: PLLIFGGQVP YRLTGDNAVE ALFNGGSPGI GITRGNTGDY FFGPGLEELF EQLSAGTTRR GPPPAPRSAI DALPTIKIAQ RHLRSSDSNC PVCKDEFELG
201: SEAKQMPCNH IYHSDCIVPW LVQHNSCPVC RQELPSASGP SSSQNRTTPT RNYRSSSSSS SSNSRENGNE RRNPFSSFWP FRSSGSSSSS TQNRGGTRNS
301: DTSDENHNYH QQQHQQSYMG YSGWPFDY

Arabidopsis Description

RHC1AProbable E3 ubiquitin-protein ligase RHC1A [Source:UniProtKB/Swiss-Prot;Acc:O22197]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.