Factsheet for Solyc02g089410.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400003515	Potato	nucleus	89.91	79.25
Solyc02g065650.1.1	Tomato	cytosol, nucleus, plastid	49.54	40.81
Os06t0633500-01	Rice	cytosol, nucleus	14.07	37.1
VIT_14s0083g00710.t01	Wine grape	nucleus	39.76	33.25
KRH18313	Soybean	nucleus	37.0	32.35
KRG93748	Soybean	nucleus, plastid	36.39	31.32
GSMUA_Achr8P24510_001	Banana	cytosol	33.64	27.78
CDY34722	Canola	cytosol	28.44	23.85
AT3G02340.2	Thale cress	cytosol	29.66	23.72
CDY34721	Canola	cytosol	28.13	23.59
TraesCS6B01G318600.1	Wheat	cytosol, plastid	22.02	23.45
Bra021467.1-P	Field mustard	nucleus	27.22	22.82
TraesCS6A01G288800.1	Wheat	cytosol, plastid	21.41	22.8
OQU85475	Sorghum	cytosol	22.02	22.5
Os02t0727700-01	Rice	cytosol, nucleus, plastid	21.1	22.19
Zm00001d051736_P001	Maize	cytosol	22.02	21.82
Os08t0487500-01	Rice	plastid	18.04	21.77
Bra008671.1-P	Field mustard	nucleus	18.96	21.6
CDX69496	Canola	cytosol	18.96	21.53
AT5G15820.1	Thale cress	cytosol	22.63	21.26
TraesCS7A01G247700.1	Wheat	cytosol, plastid	17.13	20.82
TraesCS7B01G144100.1	Wheat	plastid	17.13	20.82
GSMUA_Achr3P06300_001	Banana	cytosol	32.72	20.5
TraesCS7D01G246300.1	Wheat	plastid	16.82	20.45
CDY26465	Canola	cytosol	20.8	20.06
CDX85531	Canola	cytosol	20.49	19.53
Solyc03g114680.2.1	Tomato	nucleus	29.66	19.48
CDX90972	Canola	cytosol	19.88	19.4
Zm00001d031273_P001	Maize	cytosol, plastid	17.13	19.38
EES14331	Sorghum	plastid	17.13	19.11
HORVU6Hr1G072430.1	Barley	cytosol	20.8	18.68
Bra023539.1-P	Field mustard	cytoskeleton, cytosol, nucleus	22.32	18.39
Zm00001d046663_P001	Maize	cytosol	16.51	18.12
EER90075	Sorghum	nucleus	16.21	17.49
Solyc09g074460.1.1	Tomato	nucleus	19.88	17.24
TraesCS7D01G387300.1	Wheat	cytosol	17.13	17.18
Solyc08g075910.1.1	Tomato	nucleus	15.6	16.94
TraesCS7B01G293600.1	Wheat	cytosol	16.82	16.67
TraesCS7A01G391700.1	Wheat	cytosol	16.82	16.62
Solyc04g009170.1.1	Tomato	nucleus	14.37	15.21
TraesCS6D01G160300.1	Wheat	nucleus	15.9	14.94
Solyc03g098590.2.1	Tomato	cytosol	16.82	14.91
Zm00001d053704_P001	Maize	cytosol	16.21	14.89
HORVU7Hr1G092570.1	Barley	cytosol	17.43	14.88
OQU84547	Sorghum	cytoskeleton, cytosol, nucleus	17.13	14.47
Solyc01g009000.2.1	Tomato	plastid	14.07	14.47
HORVU6Hr1G034800.1	Barley	cytosol, nucleus	15.9	14.05
Os02t0191500-01	Rice	nucleus	15.6	13.6
Solyc01g104260.2.1	Tomato	mitochondrion	12.23	13.33
TraesCS6B01G198800.1	Wheat	nucleus	15.9	12.97
Solyc04g011610.1.1	Tomato	nucleus	14.98	12.41
Solyc06g005650.2.1	Tomato	extracellular	7.34	12.0
Solyc01g050040.2.1	Tomato	nucleus	10.4	11.64
Solyc11g012950.1.1	Tomato	cytosol	11.31	11.11

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	GO:GO:0000209	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016740	GO:GO:0019538
GO:GO:0042787	GO:GO:0043161	GO:GO:0061630	InterPro:IPR001841	InterPro:IPR013083	UniProt:K4BC92
PFAM:PF13639	PFscan:PS50089	PANTHER:PTHR44679	SMART:SM00184	SUPFAM:SSF57850	EnsemblPlantsGene:Solyc02g089410.2
EnsemblPlants:Solyc02g089410.2.1	UniParc:UPI0002768A92	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

No Description!

Coordinates

chr2:+:51245684..51248377

Molecular Weight (calculated)

36728.7 Da

IEP (calculated)

3.934

GRAVY (calculated)

-0.623

Length

327 amino acids

Sequence
(BLAST)

001: MAENYSLRFH IQTTNFSENE VEQENPTYSF SPYNPTFFIP SFDSGTDLVT DLFDSRNDEV TDHPYVVHNN SNSRVLPDDE ELELGFEFDG LRVVGVDSES
101: DSEDEEVIHQ IGNSSVPDLW NCFRVGDEGD LDEDSEWEEV ERVEGREDNM SYLIGRMEEI SVSSDFSSEE GNLGFGEDGE GGQSRNLEWE FLVAVNDLER
201: SLELHNAVIL QDGGGFGAVD FVGSQERLKG SPPTAKSVLE NLPLVVVSDE HLKGSNAACA VCKDEILSTE KMTRLPCSHY YHCDCIMPWL NIRNTCPVCR
301: HELPTDNADY ERENGRSAGQ GHVNDFQ

Best Arabidopsis Sequence Match ( AT3G02340.2 )
(BLAST)

001: MASTKPDSAI NLEEEAEGDG VAVDDPIFIP ETTNLLVRYS PFDDRDIDCN PYFPFTGPIS DSGSGSYSDS EPDPNSCPID FFDRDSSDVD VAEYLESGGL
101: TAGDYNIWGF YDPKEDEEEE EIVLGTSGSD LQPGDSGEQG LRVTGIDSDS DCEDGVFDFI SEDSSGNRGN DSGRVEVGTG LPPVWDHLFG EGTVLADEEW
201: EEVQNAINWT AFSGPEDEDE EDELSSLSRD DEEEDHELDW QVLLTVNNVV NYIEQAEGIM LNPDDIDPDY YLYLSGLDEF DENHSGHYDA DAILGQMFDD
301: ETGIRGNPPA AKSVIQDLPV VELAVEELDK GNNVCAVCKD EMLVEEKVRR LPCSHFYHGE CIIPWLGIRN TCPVCRYELP TDDLEYERHK SSERGDTGLA
401: RNVLPGRYS

Arabidopsis Description

At3g02340 [Source:UniProtKB/TrEMBL;Acc:Q9FWA5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.