Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G08139.1 | KXG37587 | AT4G14640.1 | 17360592 |
| AT5G08139.1 | KXG37588 | AT4G14640.1 | 17360592 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d046663_P001 | Maize | cytosol | 84.82 | 86.24 |
| Os06t0633500-01 | Rice | cytosol, nucleus | 30.36 | 74.19 |
| TraesCS7D01G387300.1 | Wheat | cytosol | 70.3 | 65.34 |
| TraesCS7A01G391700.1 | Wheat | cytosol | 71.29 | 65.26 |
| TraesCS7B01G293600.1 | Wheat | cytosol | 70.63 | 64.85 |
| HORVU7Hr1G092570.1 | Barley | cytosol | 68.98 | 54.57 |
| OQU85475 | Sorghum | cytosol | 24.42 | 23.12 |
| EER89027 | Sorghum | nucleus | 23.43 | 22.12 |
| EES14331 | Sorghum | plastid | 21.12 | 21.84 |
| EER95109 | Sorghum | plastid | 19.14 | 21.09 |
| EER92269 | Sorghum | nucleus | 19.47 | 20.7 |
| CDY69134 | Canola | cytosol | 17.16 | 17.87 |
| CDX78323 | Canola | cytosol | 16.83 | 17.71 |
| Bra005970.1-P | Field mustard | cytosol | 16.83 | 17.59 |
| KXG39475 | Sorghum | cytosol | 18.48 | 17.45 |
| EER89401 | Sorghum | mitochondrion, nucleus | 19.14 | 17.37 |
| EES17560 | Sorghum | plastid | 23.1 | 16.95 |
| CDY34722 | Canola | cytosol | 21.78 | 16.92 |
| KXG33564 | Sorghum | mitochondrion | 16.83 | 16.89 |
| CDY34721 | Canola | cytosol | 21.45 | 16.67 |
| CDX85531 | Canola | cytosol | 18.81 | 16.62 |
| Bra021467.1-P | Field mustard | nucleus | 21.12 | 16.41 |
| Solyc02g089410.2.1 | Tomato | nucleus | 17.49 | 16.21 |
| CDX90972 | Canola | cytosol | 17.82 | 16.12 |
| KRH56750 | Soybean | cytosol | 18.15 | 16.08 |
| OQU84547 | Sorghum | cytoskeleton, cytosol, nucleus | 20.46 | 16.02 |
| AT5G08139.1 | Thale cress | cytosol | 19.8 | 15.96 |
| GSMUA_Achr8P24510_001 | Banana | cytosol | 20.46 | 15.66 |
| CDX69973 | Canola | cytosol | 18.48 | 15.56 |
| AT5G15820.1 | Thale cress | cytosol | 17.82 | 15.52 |
| KRH03189 | Soybean | nucleus | 18.15 | 15.49 |
| AT3G02340.2 | Thale cress | cytosol | 20.79 | 15.4 |
| VIT_14s0083g00710.t01 | Wine grape | nucleus | 19.47 | 15.09 |
| CDY26465 | Canola | cytosol | 16.83 | 15.04 |
| CDY21513 | Canola | cytosol | 17.49 | 14.89 |
| PGSC0003DMT400003515 | Potato | nucleus | 18.15 | 14.82 |
| VIT_17s0000g04730.t01 | Wine grape | nucleus | 21.45 | 14.81 |
| Bra009323.1-P | Field mustard | cytosol | 18.48 | 14.78 |
| KRG93748 | Soybean | nucleus, plastid | 18.48 | 14.74 |
| KRH18313 | Soybean | nucleus | 18.15 | 14.71 |
| KXG22238 | Sorghum | plastid | 18.81 | 14.65 |
| Bra023539.1-P | Field mustard | cytoskeleton, cytosol, nucleus | 19.14 | 14.61 |
| PGSC0003DMT400063293 | Potato | nucleus | 20.79 | 14.58 |
| CDY51628 | Canola | peroxisome | 19.47 | 14.53 |
| CDY02194 | Canola | peroxisome | 18.81 | 14.32 |
| Bra008671.1-P | Field mustard | nucleus | 13.53 | 14.29 |
| CDX69496 | Canola | cytosol | 13.53 | 14.24 |
| EES00577 | Sorghum | nucleus | 16.83 | 14.21 |
| Solyc02g065650.1.1 | Tomato | cytosol, nucleus, plastid | 18.48 | 14.11 |
| PGSC0003DMT400068309 | Potato | cytosol | 18.48 | 14.07 |
| Bra013006.1-P | Field mustard | nucleus | 19.14 | 13.91 |
| KXG37275 | Sorghum | nucleus | 17.49 | 13.84 |
| KXG31176 | Sorghum | plastid | 16.17 | 13.76 |
| AT5G60820.1 | Thale cress | cytosol | 17.82 | 12.89 |
| Solyc03g114680.2.1 | Tomato | nucleus | 21.12 | 12.85 |
| GSMUA_Achr3P06300_001 | Banana | cytosol | 19.8 | 11.49 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | EntrezGene:8083488 | UniProt:C5Z6A2 | EnsemblPlants:EER90075 | ProteinID:EER90075 |
| ProteinID:EER90075.1 | GO:GO:0000209 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006464 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0042787 |
| GO:GO:0043161 | GO:GO:0061630 | InterPro:IPR001841 | InterPro:IPR013083 | PFAM:PF13639 | PFscan:PS50089 |
| PANTHER:PTHR44679 | SMART:SM00184 | EnsemblPlantsGene:SORBI_3010G199100 | SUPFAM:SSF57850 | unigene:Sbi.4211 | UniParc:UPI0001A89A3A |
| RefSeq:XP_002438708.1 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr10:-:54231210..54232441
Molecular Weight (calculated)
32057.8 Da
IEP (calculated)
3.761
GRAVY (calculated)
-0.322
Length
303 amino acids
Sequence
(BLAST)
(BLAST)
001: MADFDDELFL DVGDDGFGDL SYVSFSESIE LDLDCPRHVL SPGFDPETLT PTPGSPISFD SDPDLRGLSP SLTRSPPFWD CLEDDAASFE WEEIADAAPG
101: VGSGGGGGGG GGGGVGGGGL EGETDADVFG FLDEREMLGV MEGIDSGDDD SIFSDEPPFD FGDDDAELEG IFRSGVGWEL LPASLDDEFE ILPEHVVDVG
201: GAPPAARAAV ERLQVVAVRG EEAAQGCAVC KEGMEQGELA TGLPCGHFYH GACIGPWLAI RNTCPVCRYE LPTDDPEYER RRARRRSAGG STPQLGTRTP
301: MRI
101: VGSGGGGGGG GGGGVGGGGL EGETDADVFG FLDEREMLGV MEGIDSGDDD SIFSDEPPFD FGDDDAELEG IFRSGVGWEL LPASLDDEFE ILPEHVVDVG
201: GAPPAARAAV ERLQVVAVRG EEAAQGCAVC KEGMEQGELA TGLPCGHFYH GACIGPWLAI RNTCPVCRYE LPTDDPEYER RRARRRSAGG STPQLGTRTP
301: MRI
001: MDDLLHQRVE QSQVTPPHDD SNIHGDFDNE ATDESRSETC SVVIEGNCDM VIELGLESGS VIVENLGDSD IDVSNDFDEP DDDDFFVGRT DFGLEFRDIA
101: SSGNDIRLIT VESGSDDDDG VENERELWGI DLNEEDVYVN DDDEYEDDDV SVTIPLCWDS LQLEDREVTA DEFDWEEVGG GGGGGVDDER EIRSGFAQID
201: MNDESLISAS PIISLEGLVT RERAEGSGNL GWEVLLNHTL EINFDVDNRE LYIGGDHDDY VQDYDMLFEQ FADAEVSVIG LPPTSKSFLN NLPVVLLEGE
301: NDDDGGLVCA VCKDEMNIGN KAVQLPCNHK YHSECIVPWL KVRNTCPVCR YELPTDDAEY EQRKTQRTTN TFGMVL
101: SSGNDIRLIT VESGSDDDDG VENERELWGI DLNEEDVYVN DDDEYEDDDV SVTIPLCWDS LQLEDREVTA DEFDWEEVGG GGGGGVDDER EIRSGFAQID
201: MNDESLISAS PIISLEGLVT RERAEGSGNL GWEVLLNHTL EINFDVDNRE LYIGGDHDDY VQDYDMLFEQ FADAEVSVIG LPPTSKSFLN NLPVVLLEGE
301: NDDDGGLVCA VCKDEMNIGN KAVQLPCNHK YHSECIVPWL KVRNTCPVCR YELPTDDAEY EQRKTQRTTN TFGMVL
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8GYG0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.