CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

plastid 1
endoplasmic reticulum 1
nucleus 3
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER87882
EER89250
EER90021
EER90075
EER90152
EER90817
EER90840
EER90862
EER91288
EER91482
EER92305
EER92735
EER92955
EER93379
EER93380
EER93387
EER93646
EER94173
EER94469
EER94903
EER95236
EER95753
EER95817
EER95837
EER96589
EER96590
EER96905
EER97510
EER97734
EER97857
EER97932
EER97934
EER98367
EER98550
EER98893
EER99080
EER99594
EES00093
EES00605
EES01094
EES01191
EES01425
EES02889
EES03370
EES03608
EES03806
EES05353
EES05627
EES05685
EES05817
EES05842
EES06428
EES06917
EES07173
EES07324
EES07549
EES10067
EES12516
EES12555
EES12768
EES14331
EES15407
EES17766
EES18394
EES18716
EES19853
EES20022
KXG19789
KXG19863
KXG20422
KXG20550
KXG22552
KXG23502
KXG24408
KXG24409
KXG25724
KXG27334
KXG28888
KXG28889
KXG28890
KXG28892
KXG28893
KXG29404
KXG32310
KXG33227
KXG34333
KXG34347
KXG35340
KXG36890
KXG37241
KXG37596
KXG38099
KXG38314
KXG38456
OQU76281
OQU76282
OQU76295
OQU76297
OQU76351
OQU78181
OQU78436
OQU80257
OQU80381
OQU80908
OQU82016
OQU82042
OQU83804
OQU83806
OQU84547
OQU84848
OQU85475
OQU86148
OQU87982
OQU88393
OQU88397
OQU88717
OQU88865
OQU90148
OQU90756
OQU91676
OQU92600
OQU92890
OQU93000

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G14640.1	EER90152	AT1G20930.1	17360592
AT4G14640.1	OQU80908	AT1G20930.1	17360592
AT4G14640.1	EES05627	AT1G20950.1	17360592
AT4G14640.1	KXG34347	AT1G20950.1	17360592
AT4G14640.1	KXG35340	AT1G20950.1	17360592
AT4G14640.1	OQU76351	AT1G20950.1	17360592
AT4G14640.1	OQU80257	AT1G20950.1	17360592
AT4G14640.1	EER99080	AT1G51170.1	17360592
AT4G14640.1	EES15407	AT1G51170.1	17360592
AT4G14640.1	KXG36890	AT1G54610.1	17360592
AT4G14640.1	OQU92600	AT1G54610.1	17360592
AT4G14640.1	EER93646	AT1G74740.1	17360592
AT4G14640.1	OQU87982	AT1G77145.1	17360592
AT4G14640.1	EER89250	AT2G03710.1	17360592
AT4G14640.1	OQU93000	AT2G03710.1	17360592
AT4G14640.1	EER90840	AT2G23080.1	17360592
AT4G14640.1	EER97857	AT2G23080.1	17360592
AT4G14640.1	EER98550	AT2G23290.1	17360592
AT4G14640.1	KXG38314	AT2G28380.1	17360592
AT4G14640.1	EES00093	AT2G30980.1	17360592
AT4G14640.1	EER91482	AT2G31180.1	17360592
AT4G14640.1	EES05685	AT2G31180.1	17360592
AT4G14640.1	EES07173	AT2G31180.1	17360592
AT4G14640.1	EES12516	AT2G31180.1	17360592
AT4G14640.1	EES12768	AT2G31180.1	17360592
AT4G14640.1	EES01425	AT2G46130.1	17360592
AT4G14640.1	EES19853	AT2G46130.1	17360592
AT4G14640.1	KXG29404	AT2G48010.1	17360592
AT4G14640.1	KXG36890	AT3G05050.1	17360592
AT4G14640.1	OQU92600	AT3G05050.1	17360592
AT4G14640.1	EES02889	AT3G17240.1	17360592
AT4G14640.1	EES17766	AT3G17240.1	17360592
AT4G14640.1	EES00605	AT3G17600.1	17360592
AT4G14640.1	EER92305	AT3G56270.1	17360592
AT4G14640.1	EER97734	AT3G56270.1	17360592
AT4G14640.1	OQU78181	AT3G56270.1	17360592
AT4G14640.1	EER90817	AT4G02410.1	17360592
AT4G14640.1	EER93379	AT4G02410.1	17360592
AT4G14640.1	EER93380	AT4G02410.1	17360592
AT4G14640.1	EER94173	AT4G02410.1	17360592
AT4G14640.1	EER95837	AT4G02410.1	17360592
AT4G14640.1	EER97932	AT4G02410.1	17360592
AT4G14640.1	EER97934	AT4G02410.1	17360592
AT4G14640.1	EER98367	AT4G02410.1	17360592
AT4G14640.1	EER99594	AT4G02410.1	17360592
AT4G14640.1	EES07549	AT4G02410.1	17360592
AT4G14640.1	EES12555	AT4G02410.1	17360592
AT4G14640.1	KXG19863	AT4G02410.1	17360592
AT4G14640.1	KXG22552	AT4G02410.1	17360592
AT4G14640.1	KXG24408	AT4G02410.1	17360592
AT4G14640.1	KXG24409	AT4G02410.1	17360592
AT4G14640.1	KXG34333	AT4G02410.1	17360592
AT4G14640.1	KXG37241	AT4G02410.1	17360592
AT4G14640.1	KXG38456	AT4G02410.1	17360592
AT4G14640.1	OQU76281	AT4G02410.1	17360592
AT4G14640.1	OQU76282	AT4G02410.1	17360592
AT4G14640.1	OQU76295	AT4G02410.1	17360592
AT4G14640.1	OQU76297	AT4G02410.1	17360592
AT4G14640.1	OQU78436	AT4G02410.1	17360592
AT4G14640.1	OQU82016	AT4G02410.1	17360592
AT4G14640.1	OQU84848	AT4G02410.1	17360592
AT4G14640.1	OQU88393	AT4G02410.1	17360592
AT4G14640.1	OQU88397	AT4G02410.1	17360592
AT4G14640.1	OQU88865	AT4G02410.1	17360592
AT4G14640.1	OQU90148	AT4G02410.1	17360592
AT4G14640.1	OQU92890	AT4G02410.1	17360592
AT4G14640.1	EER94469	AT4G17080.1	17360592
AT4G14640.1	EES03608	AT4G18950.1	17360592
AT4G14640.1	EER92955	AT4G21470.1	17360592
AT4G14640.1	OQU91676	AT4G21470.1	17360592
AT4G14640.1	EES01094	AT4G23650.1	17360592
AT4G14640.1	EES20022	AT4G23650.1	17360592
AT4G14640.1	EER87882	AT4G23810.1	17360592
AT4G14640.1	EER96589	AT4G23810.1	17360592
AT4G14640.1	EER96590	AT4G23810.1	17360592
AT4G14640.1	EES03370	AT4G23810.1	17360592
AT4G14640.1	EES18716	AT4G23810.1	17360592
AT4G14640.1	OQU80381	AT4G23810.1	17360592
AT4G14640.1	EER92735	AT4G24390.1	17360592
AT4G14640.1	EES05842	AT4G24390.1	17360592
AT4G14640.1	EES05817	AT4G36250.1	17360592
AT4G14640.1	OQU82042	AT4G36250.1	17360592
AT4G14640.1	EER93387	AT4G37240.1	17360592
AT4G14640.1	EER95817	AT4G37240.1	17360592
AT4G14640.1	KXG37596	AT4G37240.1	17360592
AT4G14640.1	EER94903	AT5G01890.1	17360592
AT4G14640.1	EES03806	AT5G01890.1	17360592
AT4G14640.1	EES18394	AT5G01890.1	17360592
AT4G14640.1	EER90075	AT5G08139.1	17360592
AT4G14640.1	EES14331	AT5G08139.1	17360592
AT4G14640.1	OQU84547	AT5G08139.1	17360592
AT4G14640.1	OQU85475	AT5G08139.1	17360592
AT4G14640.1	KXG20550	AT5G10520.1	17360592
AT4G14640.1	EER96905	AT5G15830.1	17360592
AT4G14640.1	EES06428	AT5G15830.1	17360592
AT4G14640.1	EES07324	AT5G15830.1	17360592
AT4G14640.1	KXG19789	AT5G15830.1	17360592
AT4G14640.1	KXG20422	AT5G15830.1	17360592
AT4G14640.1	KXG25724	AT5G15830.1	17360592
AT4G14640.1	EER90021	AT5G35410.1	17360592
AT4G14640.1	EER96905	AT5G38800.1	17360592
AT4G14640.1	EES06428	AT5G38800.1	17360592
AT4G14640.1	EES07324	AT5G38800.1	17360592
AT4G14640.1	KXG19789	AT5G38800.1	17360592
AT4G14640.1	KXG20422	AT5G38800.1	17360592
AT4G14640.1	KXG25724	AT5G38800.1	17360592
AT4G14640.1	EER98893	AT5G39670.1	17360592
AT4G14640.1	OQU88717	AT5G39670.1	17360592
AT4G14640.1	OQU90756	AT5G39670.1	17360592
AT4G14640.1	EES05353	AT5G40540.1	17360592
AT4G14640.1	KXG27334	AT5G40540.1	17360592
AT4G14640.1	EER91288	AT5G48670.1	17360592
AT4G14640.1	EES06917	AT5G48670.1	17360592
AT4G14640.1	EES10067	AT5G48670.1	17360592
AT4G14640.1	KXG28888	AT5G48670.1	17360592
AT4G14640.1	KXG28889	AT5G48670.1	17360592
AT4G14640.1	KXG28890	AT5G48670.1	17360592
AT4G14640.1	KXG28892	AT5G48670.1	17360592
AT4G14640.1	KXG28893	AT5G48670.1	17360592
AT4G14640.1	KXG32310	AT5G48670.1	17360592
AT4G14640.1	KXG38099	AT5G48670.1	17360592
AT4G14640.1	OQU83804	AT5G48670.1	17360592
AT4G14640.1	OQU83806	AT5G48670.1	17360592
AT4G14640.1	EES01191	AT5G53450.1	17360592
AT4G14640.1	KXG33227	AT5G56890.1	17360592
AT4G14640.1	OQU86148	AT5G56890.1	17360592
AT4G14640.1	EER90862	AT5G60910.1	17360592
AT4G14640.1	EER95753	AT5G60910.1	17360592
AT4G14640.1	EER97510	AT5G60910.1	17360592
AT4G14640.1	KXG23502	AT5G60910.1	17360592
AT4G14640.1	EER95236	AT5G66790.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G382800.2	Wheat	plastid	4.38	3.21
EES19997	Sorghum	plastid	2.92	2.15
OQU78227	Sorghum	cytosol	2.19	1.68
PGSC0003DMT400083727	Potato	cytosol	1.46	1.36
Solyc01g105630.2.1	Tomato	cytosol	1.46	1.36
KRG95596	Soybean	cytosol	1.46	1.35
KRH67274	Soybean	cytosol	1.46	1.35
KRH32074	Soybean	cytosol	1.46	1.34
EER90981	Sorghum	cytosol	1.46	1.34
KRH71363	Soybean	cytosol	1.46	1.34
VIT_00s0179g00280.t01	Wine grape	cytosol	1.46	1.34
VIT_05s0020g04420.t01	Wine grape	cytosol	1.46	1.34
KRH31638	Soybean	cytosol	1.46	1.33
KRG92449	Soybean	cytosol	1.46	1.33
KRH34350	Soybean	cytosol	1.46	1.33
KRH69070	Soybean	cytosol	1.46	1.33
Solyc03g005240.1.1	Tomato	cytosol	1.46	1.31
PGSC0003DMT400034833	Potato	cytosol	1.46	1.31
EES01631	Sorghum	cytosol	1.46	1.09
CDX94883	Canola	cytosol	0.73	0.9
CDY10325	Canola	cytosol	0.73	0.88
KRG94637	Soybean	cytosol	0.73	0.88
KRH68729	Soybean	cytosol	0.73	0.67
KRG92667	Soybean	cytosol	0.73	0.67
KRG96966	Soybean	cytosol	0.73	0.67
Solyc06g053930.2.1	Tomato	cytosol	0.73	0.67
KRH34082	Soybean	cytosol	0.73	0.67
PGSC0003DMT400042062	Potato	cytosol	0.73	0.67
AT4G14640.1	Thale cress	cytosol	0.73	0.66
CDY06478	Canola	cytosol	0.73	0.66
Bra039723.1-P	Field mustard	cytosol	0.73	0.65
Bra001892.1-P	Field mustard	cytosol	0.73	0.65
CDX92965	Canola	cytosol	0.73	0.65
Bra033898.1-P	Field mustard	cytosol	0.73	0.65
CDY10686	Canola	cytosol	0.73	0.65
Bra023786.1-P	Field mustard	cytosol	0.73	0.64
CDY34215	Canola	cytosol	0.73	0.64
AT3G22930.1	Thale cress	cytosol	0.73	0.58
EES09201	Sorghum	cytosol	0.73	0.56
CDY40824	Canola	cytosol	0.73	0.56
OQU84270	Sorghum	cytosol, plastid	0.73	0.46
EES03239	Sorghum	plastid	0.73	0.42
Zm00001d033980_P001	Maize	cytosol	0.0	0.0
GSMUA_AchrUn_...	Banana	cytosol	0.0	0.0
VIT_14s0030g02150.t01	Wine grape	cytosol	0.0	0.0
Os03t0743500-02	Rice	nucleus	0.0	0.0
OQU79799	Sorghum	cytosol	0.0	0.0
KXG37587	Sorghum	cytosol	0.0	0.0
KXG36700	Sorghum	cytosol	0.0	0.0
EES16322	Sorghum	cytosol	0.0	0.0
GSMUA_Achr7P07720_001	Banana	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.10.20.10	MapMan:12.1.2	UniProt:A0A1B6QI42	GO:GO:0000786	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005694	GO:GO:0046982	InterPro:Histone-fold	InterPro:Histone_H2A	InterPro:Histone_H2A/H2B/H3
InterPro:Histone_H2A_C	InterPro:Histone_H2A_CS	InterPro:IPR009072	EnsemblPlants:KXG37588	ProteinID:KXG37588	ProteinID:KXG37588.1
PFAM:PF00125	PFAM:PF16211	PRINTS:PR00620	ScanProsite:PS00046	PANTHER:PTHR23430	PANTHER:PTHR23430:SF105
SMART:SM00414	EnsemblPlantsGene:SORBI_3001G094500	SUPFAM:SSF47113	UniParc:UPI000018F121	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:-:7251832..7257471

Molecular Weight (calculated)

14459.7 Da

IEP (calculated)

11.120

GRAVY (calculated)

-0.350

Length

137 amino acids

Sequence
(BLAST)

001: MAGKGGKGLL AAKTTAAKSA EKDKGKKAPV SRSSRAGLQF PVGRIHRQLK QRTQANGRVG ATAAVYSAAI LEYLTAEVLE LAGNASKDLK VKRITPRHLQ
101: LAIRGDEELD TLIKGTIAGG GVIPHIHKSL INKSSKE

Best Arabidopsis Sequence Match ( AT3G54560.1 )
(BLAST)

001: MAGKGGKGLV AAKTMAANKD KDKDKKKPIS RSARAGIQFP VGRIHRQLKT RVSAHGRVGA TAAVYTASIL EYLTAEVLEL AGNASKDLKV KRITPRHLQL
101: AIRGDEELDT LIKGTIAGGG VIPHIHKSLI NKTTKE

Arabidopsis Description

H2AVHistone H2A [Source:UniProtKB/TrEMBL;Acc:A0A178V944]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.