CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EES01631
EES09201
EES16322
KXG37587
KXG37588
OQU78227

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46130.1	EES01631	AT2G41090.1	17360592
AT2G46130.1	EES09201	AT2G41090.1	17360592
AT2G46130.1	EES16322	AT2G41090.1	17360592
AT2G46130.1	OQU78227	AT2G41090.1	17360592
AT2G46130.1	EES01631	AT2G41100.1	17360592
AT2G46130.1	EES09201	AT2G41100.1	17360592
AT2G46130.1	EES16322	AT2G41100.1	17360592
AT2G46130.1	OQU78227	AT2G41100.1	17360592
AT2G46130.1	KXG37587	AT4G14640.1	17360592
AT2G46130.1	KXG37588	AT4G14640.1	17360592
AT2G46130.1	EES01631	AT5G21274.1	17360592
AT2G46130.1	EES09201	AT5G21274.1	17360592
AT2G46130.1	EES16322	AT5G21274.1	17360592
AT2G46130.1	OQU78227	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d012789_P001	Maize	nucleus	77.64	84.14
AT2G46130.1	Thale cress	nucleus	30.89	69.72
Os01t0734000-01	Rice	nucleus	67.89	65.75
TraesCS3D01G280200.1	Wheat	nucleus	53.25	59.01
TraesCS3A01G280400.1	Wheat	nucleus	52.85	58.56
HORVU3Hr1G069660.1	Barley	nucleus	52.44	55.84
GSMUA_Achr7P24780_001	Banana	nucleus	40.24	55.0
VIT_15s0046g02150.t01	Wine grape	nucleus, plastid	43.9	53.73
KRH40372	Soybean	cytosol	40.65	52.08
KRH00862	Soybean	cytosol	40.24	51.56
EES19853	Sorghum	nucleus, plastid	49.59	50.62
KRH06569	Soybean	nucleus	39.84	50.26
CDY44466	Canola	nucleus	35.37	49.43
Bra025490.1-P	Field mustard	nucleus	34.55	48.85
Bra027768.1-P	Field mustard	nucleus	36.99	48.66
CDY38208	Canola	nucleus	36.59	48.39
CDY39732	Canola	nucleus	34.55	48.3
CDY55479	Canola	nucleus	36.18	47.85
CDY25554	Canola	nucleus	36.18	47.34
Bra027675.1-P	Field mustard	nucleus	36.18	47.09
AT5G41570.1	Thale cress	nucleus	34.15	46.93
CDY34393	Canola	nucleus	36.18	46.84
AT1G64000.1	Thale cress	nucleus	36.59	46.15
PGSC0003DMT400032090	Potato	nucleus	40.24	43.42
Solyc08g081630.1.1	Tomato	nucleus	40.24	42.86
EES08501	Sorghum	nucleus	30.08	32.89
EES19157	Sorghum	nucleus	25.2	30.1
KXG31104	Sorghum	nucleus	25.2	26.05
EES18577	Sorghum	plastid	22.76	25.57
EES00970	Sorghum	nucleus	22.36	25.46
KXG26824	Sorghum	nucleus	27.64	25.28
KXG33244	Sorghum	plastid	22.76	24.89
EES00157	Sorghum	nucleus	23.17	21.92
KXG34273	Sorghum	mitochondrion	23.58	21.32
OQU78504	Sorghum	nucleus	22.36	20.99
OQU86187	Sorghum	mitochondrion, nucleus	21.95	18.31
EES01107	Sorghum	nucleus	26.42	18.01
EER90854	Sorghum	nucleus	23.98	17.82
EES03393	Sorghum	nucleus	27.24	16.34
EES18690	Sorghum	nucleus	26.42	15.33

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	EntrezGene:8075540	UniProt:C5XJ41	EnsemblPlants:EES01425	ProteinID:EES01425
ProteinID:EES01425.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:IPR003657	InterPro:IPR036576	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31221	PANTHER:PTHR31221:SF7
SMART:SM00774	EnsemblPlantsGene:SORBI_3003G287200	SUPFAM:SSF118290	UniParc:UPI0001A848B6	InterPro:WRKY_dom	InterPro:WRKY_dom_sf
RefSeq:XP_002456305.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:62028638..62032127

Molecular Weight (calculated)

26680.5 Da

IEP (calculated)

7.610

GRAVY (calculated)

-0.575

Length

246 amino acids

Sequence
(BLAST)

001: MENQHLQGDE SSSSHALPSF PYFAVPSPPY APPPPSEDQH STLITALQQQ PSSSACNNDD LPPLGLGPDQ LAAVAAPMIL PPMVDWSALL QQASLMGPQL
101: VPGLLQQVPP LEPLDQSGEN DGGDAGSSSS SKEKVVAKGG GGAGRSGKKK ASRPRFAFQT RSVNDILDDG YRWRKYGQKA VKNSEHPRSY YRCTHHTCNV
201: KKQVQRLAKD TSIVVTTYEG VHNHPCEKLM EALSPILKQL QFLSQF

Best Arabidopsis Sequence Match ( AT5G41570.1 )
(BLAST)

001: MDREDINPML SRLDVENNNT FSSFVDKTLM MMPPSTFSGE VEPSSSSSWY PESFHVHAPP LPPENDQIGE KGKELKEKRS RKVPRIAFHT RSDDDVLDDG
101: YRWRKYGQKS VKHNAHPRSY YRCTYHTCNV KKQVQRLAKD PNVVVTTYEG VHNHPCEKLM ETLNPLLRQL QFLSSFSNL

Arabidopsis Description

WRKY24Probable WRKY transcription factor 24 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFS3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.