Factsheet for Bra025490.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra033934.1-P
Bra039937.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G41570.1	Bra033934.1-P	AT1G68450.1	21798944
AT5G41570.1	Bra039937.1-P	AT2G22880.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39732	Canola	nucleus	99.43	98.3
CDY44466	Canola	nucleus	95.4	94.32
AT5G41570.1	Thale cress	nucleus	82.18	79.89
Bra027675.1-P	Field mustard	nucleus	68.97	63.49
Bra027768.1-P	Field mustard	nucleus	67.82	63.1
TraesCS1A01G348600.1	Wheat	plastid	44.25	57.04
TraesCS1D01G351600.1	Wheat	plastid	44.25	57.04
KRH00862	Soybean	cytosol	52.87	47.92
KRH40372	Soybean	cytosol	51.15	46.35
Bra006178.1-P	Field mustard	nucleus	38.51	45.58
Bra008858.1-P	Field mustard	nucleus	37.93	44.9
GSMUA_Achr7P24780_001	Banana	nucleus	44.25	42.78
VIT_15s0046g02150.t01	Wine grape	nucleus, plastid	47.7	41.29
Bra040557.1-P	Field mustard	nucleus	32.76	39.58
PGSC0003DMT400032090	Potato	nucleus	50.0	38.16
Zm00001d012789_P001	Maize	nucleus	48.85	37.44
TraesCS3D01G280200.1	Wheat	nucleus	47.7	37.39
Zm00001d038761_P002	Maize	nucleus	46.55	37.16
Solyc08g081630.1.1	Tomato	nucleus	48.85	36.8
TraesCS3A01G280400.1	Wheat	nucleus	46.55	36.49
GSMUA_Achr6P22920_001	Banana	mitochondrion	47.13	36.12
TraesCS1B01G363200.1	Wheat	nucleus	46.55	35.37
HORVU3Hr1G069660.1	Barley	nucleus	46.55	35.06
EES01425	Sorghum	nucleus	48.85	34.55
Zm00001d010805_P001	Maize	nucleus	45.4	34.5
EES19853	Sorghum	nucleus, plastid	47.13	34.02
Os01t0734000-01	Rice	nucleus	48.28	33.07
Bra020546.1-P	Field mustard	nucleus	27.59	28.57
Bra037796.1-P	Field mustard	nucleus	26.44	27.38
HORVU1Hr1G081570.1	Barley	plastid	45.98	26.14
Bra009885.1-P	Field mustard	nucleus	26.44	26.14
Bra000362.1-P	Field mustard	nucleus	30.46	25.24
Bra004864.1-P	Field mustard	nucleus	29.89	24.19
Bra031900.1-P	Field mustard	nucleus	25.86	22.84
Bra036563.1-P	Field mustard	nucleus	20.69	22.78
Bra024328.1-P	Field mustard	nucleus	25.86	21.84
Bra032340.1-P	Field mustard	nucleus	30.46	19.41
Bra030178.1-P	Field mustard	nucleus	30.46	19.13
Bra033616.1-P	Field mustard	nucleus	31.61	18.84
Bra038313.1-P	Field mustard	nucleus	32.18	18.73
Bra040926.1-P	Field mustard	nucleus	31.61	18.71
Bra004370.1-P	Field mustard	nucleus	31.61	18.71
Bra004002.1-P	Field mustard	nucleus	31.03	18.69
Bra007674.1-P	Field mustard	nucleus	31.61	18.46
Bra011861.1-P	Field mustard	nucleus	31.61	18.46
Bra010683.1-P	Field mustard	nucleus	31.03	18.24
Bra021393.1-P	Field mustard	nucleus	31.61	17.03
Bra012614.1-P	Field mustard	nucleus	30.46	16.99
Bra004466.1-P	Field mustard	nucleus	31.03	16.93
Bra013289.1-P	Field mustard	nucleus	29.89	16.88
Bra037637.1-P	Field mustard	nucleus	17.24	16.57
Bra036138.1-P	Field mustard	nucleus	33.33	16.43
Bra025021.1-P	Field mustard	nucleus	30.46	16.41
Bra022033.1-P	Field mustard	nucleus	29.31	16.09
Bra017561.1-P	Field mustard	nucleus	27.59	14.95
Bra020628.1-P	Field mustard	nucleus	33.33	14.8
Bra010032.1-P	Field mustard	nucleus	33.33	14.54

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	EnsemblPlantsGene:Bra025490	EnsemblPlants:Bra025490.1	EnsemblPlants:Bra025490.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576
UniProt:M4E9N4	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31221	PANTHER:PTHR31221:SF7	SMART:SM00774
SUPFAM:SSF118290	UniParc:UPI00025452AA	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg	:

Description

AT5G41570 (E=8e-072) WRKY24, ATWRKY24 | WRKY24; transcription factor

Coordinates

chrA04:+:8403280..8406761

Molecular Weight (calculated)

20313.1 Da

IEP (calculated)

8.621

GRAVY (calculated)

-0.901

Length

174 amino acids

Sequence
(BLAST)

001: MERQDIIPHT LSLDVENNNN TFSSFVDETL MMMPPLALPG QVEPSSSSWC PTSFHMPTQP HENDQIGDHG KKKDKRSRKV PRIEFHTRSD DDVLDDGYRW
101: RKYGQKSVKN NGHPRSYYRC TYHTCNVKKQ VQRLAKDPKI IVTTYEGIHN HPCEKLMETL NPLLRQLQFL SSFL

Best Arabidopsis Sequence Match ( AT5G41570.1 )
(BLAST)

001: MDREDINPML SRLDVENNNT FSSFVDKTLM MMPPSTFSGE VEPSSSSSWY PESFHVHAPP LPPENDQIGE KGKELKEKRS RKVPRIAFHT RSDDDVLDDG
101: YRWRKYGQKS VKHNAHPRSY YRCTYHTCNV KKQVQRLAKD PNVVVTTYEG VHNHPCEKLM ETLNPLLRQL QFLSSFSNL

Arabidopsis Description

WRKY24Probable WRKY transcription factor 24 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFS3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.