Subcellular Localization
min:
: max
Winner_takes_all: nucleus, plastid
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 4
- cytosol 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra004466.1-P | |
| Bra012351.1-P | |
| Bra024548.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G22880.1 | Bra012351.1-P | AT1G22920.1 | 21798944 |
| AT2G22880.1 | Bra024548.1-P | AT1G22920.1 | 21798944 |
| AT2G22880.1 | Bra004466.1-P | AT2G47260.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY49439 | Canola | nucleus, plastid | 89.13 | 98.4 |
| AT2G22880.1 | Thale cress | plastid | 69.57 | 84.21 |
| Bra017849.1-P | Field mustard | nucleus, plastid | 47.83 | 57.89 |
| Bra010608.1-P | Field mustard | nucleus, plastid | 44.93 | 54.39 |
| CDX76888 | Canola | nucleus, plastid | 82.61 | 47.5 |
Protein Annotations
| EnsemblPlants:Bra039937.1 | EnsemblPlants:Bra039937.1-P | EnsemblPlantsGene:Bra039937 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0008150 | GO:GO:0009628 | GO:GO:0010224 | GO:GO:0019904 | InterPro:VQ | PANTHER:PTHR34794 |
| PANTHER:PTHR34794:SF1 | PFAM:PF05678 | UniParc:UPI0002542EE6 | UniProt:M4FFR3 | MapMan:35.1 | : |
Description
AT2G22880 (E=7e-024) | VQ motif-containing protein
Coordinates
chrA09:+:31711721..31712137
Molecular Weight (calculated)
16094.0 Da
IEP (calculated)
10.180
GRAVY (calculated)
-0.803
Length
138 amino acids
Sequence
(BLAST)
(BLAST)
001: MEATSQPCFS HNYLRSSENY NSSLHSTRKQ PAKPWKRPVT ASLQRMHPRV YRVEPVNFKE LVQRLTGAPQ DHERDEVHQV ETKPLLKVQH GLVEVRQPLK
101: IFRETTTQEN PLAFDLSPSS SRFWEAFPLL SSANLSRW
101: IFRETTTQEN PLAFDLSPSS SRFWEAFPLL SSANLSRW
001: MEATSQPCFS HNSSLHSTRK QPAKPWKKPV TGLPQRMHPK VYRVEPVNFK ELVQRLTGAE DVEQEVHQVE AKPVKISDDT TTAKDNPFAF DLSPSSSRFW
101: EAFPLLSPAN LSRW
101: EAFPLLSPAN LSRW
Arabidopsis Description
At2g22880 [Source:UniProtKB/TrEMBL;Acc:O81005]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.