Subcellular Localization
min:
: max
Winner_takes_all: nucleus, plastid
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 3
- mitochondrion 1
- cytosol 1
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G22880.1 | CDY04768 | AT1G22920.1 | 21798944 |
| AT2G22880.1 | CDY21400 | AT1G22920.1 | 21798944 |
| AT2G22880.1 | CDY25761 | AT1G22920.1 | 21798944 |
| AT2G22880.1 | CDX80094 | AT2G47260.1 | 21798944 |
| AT2G22880.1 | CDY37794 | AT2G47260.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY49439 | Canola | nucleus, plastid | 47.5 | 91.2 |
| Bra039937.1-P | Field mustard | nucleus, plastid | 47.5 | 82.61 |
| AT2G22880.1 | Thale cress | plastid | 37.5 | 78.95 |
| CDX72651 | Canola | nucleus, plastid | 25.0 | 52.63 |
| CDY29579 | Canola | plastid | 25.0 | 52.63 |
| CDY44030 | Canola | nucleus | 26.67 | 52.46 |
| CDY50261 | Canola | nucleus | 26.25 | 51.64 |
Protein Annotations
| EnsemblPlants:CDX76888 | EnsemblPlantsGene:GSBRNA2T00127407001 | InterPro:VQ | PANTHER:PTHR34794 | PANTHER:PTHR34794:SF1 | PFAM:PF05678 |
| ProteinID:CDX76888 | ProteinID:CDX76888.1 | SEG:seg | UniParc:UPI0004EE920A | MapMan:35.2 | : |
Description
BnaC08g34740D
Coordinates
chrLK031808:+:1767491..1768935
Molecular Weight (calculated)
27606.2 Da
IEP (calculated)
7.900
GRAVY (calculated)
-0.857
Length
240 amino acids
Sequence
(BLAST)
(BLAST)
001: MEATSQPCFS HNYRRSSENY NSSLHSTRKQ PAKPWKRPVT ASLQRMHPRV YRVEPVNFKE LVQSLTGAPQ DHERDQMHQV RQPLKIFHET TTQENPVAFD
101: LSPSSSRFWE AFPLLSPANL SRCSSLAATC EEKARLCLNQ IQADDDRVMF IELNAESSQK HFINAVIAEH NEWHEFEKPQ EPNEGDLIPN LISKPSVDRY
201: PPIIDIGECH GNFTKRQHRS AASCYNSARS KASYSDWRKG
101: LSPSSSRFWE AFPLLSPANL SRCSSLAATC EEKARLCLNQ IQADDDRVMF IELNAESSQK HFINAVIAEH NEWHEFEKPQ EPNEGDLIPN LISKPSVDRY
201: PPIIDIGECH GNFTKRQHRS AASCYNSARS KASYSDWRKG
001: MEATSQPCFS HNSSLHSTRK QPAKPWKKPV TGLPQRMHPK VYRVEPVNFK ELVQRLTGAE DVEQEVHQVE AKPVKISDDT TTAKDNPFAF DLSPSSSRFW
101: EAFPLLSPAN LSRW
101: EAFPLLSPAN LSRW
Arabidopsis Description
At2g22880 [Source:UniProtKB/TrEMBL;Acc:O81005]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.