Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 4
- cytosol 1
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G22880.1 | CDY04768 | AT1G22920.1 | 21798944 |
| AT2G22880.1 | CDY21400 | AT1G22920.1 | 21798944 |
| AT2G22880.1 | CDY25761 | AT1G22920.1 | 21798944 |
| AT2G22880.1 | CDX80094 | AT2G47260.1 | 21798944 |
| AT2G22880.1 | CDY37794 | AT2G47260.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra039937.1-P | Field mustard | nucleus, plastid | 98.4 | 89.13 |
| AT2G22880.1 | Thale cress | plastid | 77.6 | 85.09 |
| CDX72651 | Canola | nucleus, plastid | 52.8 | 57.89 |
| CDY29579 | Canola | plastid | 52.8 | 57.89 |
| CDY44030 | Canola | nucleus | 54.4 | 55.74 |
| CDY50261 | Canola | nucleus | 52.8 | 54.1 |
| CDX76888 | Canola | nucleus, plastid | 91.2 | 47.5 |
Protein Annotations
| EnsemblPlants:CDY49439 | EnsemblPlantsGene:GSBRNA2T00093023001 | InterPro:VQ | PANTHER:PTHR34794 | PANTHER:PTHR34794:SF1 | PFAM:PF05678 |
| ProteinID:CDY49439 | ProteinID:CDY49439.1 | UniParc:UPI0004EE2F3C | UniProt:A0A078IJ42 | MapMan:35.1 | : |
Description
BnaA09g42280DBnaA09g42280D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IJ42]
Coordinates
chrLK032833:-:59837..60253
Molecular Weight (calculated)
14600.2 Da
IEP (calculated)
9.632
GRAVY (calculated)
-0.851
Length
125 amino acids
Sequence
(BLAST)
(BLAST)
001: MEATSQPCFS HNYLRSSENY NSSLHSTRKQ PAKPWKRPVT ASLQRMHPRV YRVEPVNFKE LVQRLTGAPQ DHERDEVHQV ETKPLLKIFH ETTTQENPLA
101: FDLSPSSSRF WEAFPLLSPA NLSRW
101: FDLSPSSSRF WEAFPLLSPA NLSRW
001: MEATSQPCFS HNSSLHSTRK QPAKPWKKPV TGLPQRMHPK VYRVEPVNFK ELVQRLTGAE DVEQEVHQVE AKPVKISDDT TTAKDNPFAF DLSPSSSRFW
101: EAFPLLSPAN LSRW
101: EAFPLLSPAN LSRW
Arabidopsis Description
At2g22880 [Source:UniProtKB/TrEMBL;Acc:O81005]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.